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PLM3-1_170_b1_sep16_scaffold_7812

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_7812_1
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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2..1441
DNA (1440bp) protein (480aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7812_2
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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1438..2634
DNA (1197bp) protein (399aa)
tRNA pseudouridine synthase TruD; K06176 tRNA pseudouridine13 synthase [EC:5.4.99.27] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
tRNA pseudouridine synthase TruD
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7812_3
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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2673..3149
DNA (477bp) protein (159aa)
peptide methionine sulfoxide reductase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin2_Thaum organism_group=Archaeon
msrA; peptide-methionine (S)-S-oxide reductase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7812_4
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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3186..3416
DNA (231bp) protein (77aa)
AsnC family transcriptional regulator bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
AsnC family transcriptional regulator
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7812_5

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comp(3413..3634)
DNA (222bp) protein (74aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL28604.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
conserved exported protein of unknown function
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PLM3-1_170_b1_sep16_scaffold_7812_6
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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3693..4424
DNA (732bp) protein (244aa)
Uncharacterized protein Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A5T7_NITMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX13092.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
PLM3-1_170_b1_sep16_scaffold_7812_7

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comp(4436..4717)
DNA (282bp) protein (94aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KKB7_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKM18460.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_7812_8

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4762..5097
DNA (336bp) protein (112aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM18461.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_7812_9
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(5153..5386)
DNA (234bp) protein (78aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7812_10

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comp(5634..6674)
DNA (1041bp) protein (347aa)
Alcohol dehydrogenase (AdhP) {ECO:0000313|EMBL:AIF18929.1}; EC=1.1.1.1 {ECO:0000313|EMBL:AIF18929.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_85_A07.;"
Putative zinc-binding dehydrogenase Tax=uncultured marine crenarchaeote HF4000_APKG3D24 RepID=B3T7D0_9ARCH
alcohol dehydrogenase
PLM3-1_170_b1_sep16_scaffold_7812_11
unknown

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6830..6994
DNA (165bp) protein (55aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_7812_12
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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7072..9102
DNA (2031bp) protein (677aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7812_13
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(9099..9422)
DNA (324bp) protein (108aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_7812_14
Candidatus Nitrosopumilus sp. NF5, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(9457..9759)
DNA (303bp) protein (101aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BDJ6_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJW70431.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. NF5.;"
PLM3-1_170_b1_sep16_scaffold_7812_15
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(9867..10313)
DNA (447bp) protein (149aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
conserved exported protein of unknown function
Tax=CSP1_1_Thaumarchaeota
Displaying 15 items

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