ggKbase home page

PLM3-1_170_b1_sep16_scaffold_6383

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_6383_1
Candidatus Nitrosopumilus sp. D3C, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

2..460
DNA (459bp) protein (153aa)
hemC; putative porphobilinogen deaminase (EC:2.5.1.61)
Probable porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260, ECO:0000313|EMBL:AJM93000.1};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. D3C.;"
porphobilinogen deaminase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
PLM3-1_170_b1_sep16_scaffold_6383_2
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

457..1209
DNA (753bp) protein (251aa)
uroporphyrin-III C-methyltransferase; K02303 uroporphyrin-III C-methyltransferase [EC:2.1.1.107] bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin2_Thaum organism_group=Archaeon
uroporphyrin-III C-methyltransferase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_6383_3
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

1202..2002
DNA (801bp) protein (267aa)
hemD; uroporphyrinogen-III synthase (EC:4.2.1.75)
uroporphyrinogen III synthase HEM4 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_6383_4
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

2081..3481
DNA (1401bp) protein (467aa)
FeS assembly protein SufB bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
FeS assembly protein SufB
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_6383_5
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

3517..4917
DNA (1401bp) protein (467aa)
FeS assembly protein SufD bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
FeS assembly protein SufD
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_6383_6

Not on your lists

4923..5231
DNA (309bp) protein (103aa)
dioxygenase ferredoxin protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Naphthalene 12-dioxygenase system ferredoxin subunit protein {ECO:0000313|EMBL:KFM21299.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-B03.;"
dioxygenase ferredoxin protein
PLM3-1_170_b1_sep16_scaffold_6383_7
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

5235..5864
DNA (630bp) protein (210aa)
sufS; selenocysteine lyase, PLP-dependent (EC:4.4.1.16)
SufS subfamily cysteine desulfurase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Tax=CSP1_1_Thaumarchaeota
Displaying 7 items

View Taxonomy