ggKbase home page

PLM3-1_170_b1_sep16_scaffold_6905

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_6905_1
unknown

Not on your lists

403..1518
DNA (1116bp) protein (372aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_6905_2
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1587..1805)
DNA (219bp) protein (73aa)
Bsl2907 protein Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89R66_BRADU
Ferredoxin {ECO:0000313|EMBL:KIE53750.1}; species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G3.;"
ferredoxin
PLM3-1_170_b1_sep16_scaffold_6905_3

Not on your lists

comp(1867..2919)
DNA (1053bp) protein (351aa)
Cytochrome P450 Tax=Bradyrhizobium sp. YR681 RepID=J2WJ79_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KGA12000.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
cytochrome P450
PLM3-1_170_b1_sep16_scaffold_6905_4
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3214..4404)
DNA (1191bp) protein (397aa)
cytochrome P450 (EC:1.14.-.-)
Bll2905 protein Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89R67_BRADU
Cytochrome P450 {ECO:0000313|EMBL:ETR78018.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
PLM3-1_170_b1_sep16_scaffold_6905_5

Not on your lists

comp(4515..5204)
DNA (690bp) protein (230aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL05222.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_6905_6
unknown

Not on your lists

5261..5773
DNA (513bp) protein (171aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_6905_7
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

5848..6045
DNA (198bp) protein (66aa)
Uncharacterized protein Tax=Halorubrum RepID=M0F223_9EURY
UPF0434 family protein
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_6905_8

Not on your lists

6053..6286
DNA (234bp) protein (78aa)
Marine sediment metagenome DNA, contig: S01H1_S27566 {ECO:0000313|EMBL:GAG41192.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_6905_9
unknown

Not on your lists

6388..6531
DNA (144bp) protein (48aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_6905_10
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(6545..7072)
DNA (528bp) protein (176aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CEZ1_THET1
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_6905_11
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(7072..7488)
DNA (417bp) protein (139aa)
Thioesterase superfamily protein Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SCB3_GEOOG
thioesterase superfamily protein
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_6905_12
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(7485..8369)
DNA (885bp) protein (295aa)
dihydropteroate synthase (EC:2.5.1.15)
Dihydropteroate synthase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C536_SPHTD
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_6905_13
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

8450..9154
DNA (705bp) protein (235aa)
hypothetical protein Tax=Bacteria RepID=UPI00037D1E3C
Rhodanese-related sulfurtransferase
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_6905_14
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(9223..10518)
DNA (1296bp) protein (432aa)
Polysaccharide deacetylase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C5P7_SPHTD
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ACZ39449.1}; Flags: Precursor;; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM3-1_170_b1_sep16_scaffold_6905_15
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(10541..10738)
DNA (198bp) protein (66aa)
hypothetical protein bin=bin9_gal15 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin9_gal15 organism_group=GAL15
Tax=CSP1_3_Armatimonadetes
PLM3-1_170_b1_sep16_scaffold_6905_16
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(10695..12026)
DNA (1332bp) protein (444aa)
Major facilitator superfamily MFS_1 Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SGW0_NOCSJ
major facilitator transporter
Tax=RBG_16_Actinobacteria_67_10_curated
PLM3-1_170_b1_sep16_scaffold_6905_17
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(12023..13450)
DNA (1428bp) protein (476aa)
amidase (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_6905_18
unknown

Not on your lists

comp(13447..13716)
DNA (270bp) protein (90aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_6905_19
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

13812..14462
DNA (651bp) protein (217aa)
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3-1_170_b1_sep16_scaffold_6905_20
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(14469..14870)
DNA (402bp) protein (134aa)
Mov34/MPN/PAD-1 family protein bin=bin3_NC10 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
Mov34/MPN/PAD-1 family protein
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_6905_21

Not on your lists

comp(15004..15798)
DNA (795bp) protein (265aa)
cysK; pyridoxal-phosphate (PLP) dependent enzymes family; subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) (EC:2.5.1.47)
Pyridoxal-phosphate (PLP) dependent enzymes family subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMY9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKL81799.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_6905_22
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(15923..16603)
DNA (681bp) protein (227aa)
hypothetical protein bin=CNBR_ACIDO species=Thioalkalivibrio sp. ALJ3 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3-1_170_b1_sep16_scaffold_6905_23
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(16613..16921)
DNA (309bp) protein (103aa)
ThiamineS protein Tax=Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) RepID=D5UWP8_TSUPD
sulfur carrier protein ThiS
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_6905_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(16878..17759)
DNA (882bp) protein (294aa)
Molybdopterin biosynthesis protein moeB bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
UBA/THIF-type NAD/FAD binding protein
Tax=CSP1_6_Rokubacteria
PLM3-1_170_b1_sep16_scaffold_6905_25
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(17774..17989)
DNA (216bp) protein (72aa)
Molybdopterin biosynthesis protein moeB bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
PLM3-1_170_b1_sep16_scaffold_6905_26

Not on your lists

comp(17993..18916)
DNA (924bp) protein (308aa)
cysK; pyridoxal-phosphate (PLP) dependent enzymes family; subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) (EC:2.5.1.47) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
cysK; pyridoxal-phosphate (PLP) dependent enzymes family; subunit of cysteine synthase A (O-acetylserine sulfhydrolase A) (EC:2.5.1.47)
Uncharacterized protein {ECO:0000313|EMBL:KKM14170.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_6905_27

Not on your lists

comp(18923..19366)
DNA (444bp) protein (148aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM14169.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
BadM/Rrf2 family transcriptional regulator bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
BadM/Rrf2 family transcriptional regulator
PLM3-1_170_b1_sep16_scaffold_6905_28
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(19528..20664)
DNA (1137bp) protein (379aa)
hypothetical protein bin=bin9_gal15 species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
hypothetical protein
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_6905_29
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(20654..21865)
DNA (1212bp) protein (404aa)
sat; sulfate adenylyltransferase (EC:2.7.7.4)
Sulfate adenylyltransferase Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TZT6_9CHLR
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_6905_30
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(21904..22956)
DNA (1053bp) protein (351aa)
Methylase involved in ubiquinone/menaquinone biosynthesis Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DFX0_SINAD
methylase
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:AGA27750.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying items 1-30 of 31 in total

View Taxonomy