ggKbase home page

PLM3-1_170_b1_sep16_scaffold_3455

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_3455_1

Not on your lists

comp(1..1053)
DNA (1053bp) protein (351aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III, alpha subunit Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C6C8_SPHTD
Uncharacterized protein {ECO:0000313|EMBL:KKL54823.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_3455_2
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

Not on your lists

1105..1383
DNA (279bp) protein (93aa)
Transcriptional regulator, AbrB family Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K3H5_DEHLB
AbrB family transcriptional regulator
Tax=RBG_16_Chloroflexi_51_9_curated
PLM3-1_170_b1_sep16_scaffold_3455_3
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

1376..1789
DNA (414bp) protein (138aa)
Ribonuclease VapC Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CMD5_DESK7
twitching motility protein PilT
Tax=BJP_IG2157_Anaerolineales_55_23
PLM3-1_170_b1_sep16_scaffold_3455_4

Not on your lists

2055..2696
DNA (642bp) protein (214aa)
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI00037050A3
Uncharacterized protein {ECO:0000313|EMBL:KKM15803.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_3455_5
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

comp(2697..3422)
DNA (726bp) protein (242aa)
phosphoglycolate phosphatase (EC:3.1.3.18)
Haloacid dehalogenase superfamily enzyme, subfamily IA bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RBG_16_KB1_OP1_55_9_curated
PLM3-1_170_b1_sep16_scaffold_3455_6

Not on your lists

comp(4047..5363)
DNA (1317bp) protein (439aa)
acetyl-CoA hydrolase (EC:2.8.3.-)
4-Hydroxybutyrate CoA-transferase Tax=Clostridium aminobutyricum RepID=Q9RM86_CLOAM
Uncharacterized protein {ECO:0000313|EMBL:KKM22381.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_3455_7

Not on your lists

5478..5894
DNA (417bp) protein (139aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM22380.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_3455_8
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

5903..7249
DNA (1347bp) protein (449aa)
aminopeptidase bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
peptidase M28
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_3455_9

Not on your lists

7298..7717
DNA (420bp) protein (140aa)
cwlC; N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
peptidase M23 Tax=Halomonas sp. KM-1 RepID=UPI00028A2B46
Uncharacterized protein {ECO:0000313|EMBL:KKK47623.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM3-1_170_b1_sep16_scaffold_3455_10

Not on your lists

7733..8107
DNA (375bp) protein (125aa)
Propionyl-CoA carboxylase carboxyltransferase subunit Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9SJW6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKM75676.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Acetyl-CoA carboxylase carboxyltransferase component
PLM3-1_170_b1_sep16_scaffold_3455_11

Not on your lists

8139..9254
DNA (1116bp) protein (372aa)
Carboxyl transferase Tax=Roseiflexus sp. (strain RS-1) RepID=A5UYE9_ROSS1
Uncharacterized protein {ECO:0000313|EMBL:KKM75676.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
carboxyl transferase
PLM3-1_170_b1_sep16_scaffold_3455_12
unknown

Not on your lists

9325..9816
DNA (492bp) protein (164aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_3455_13
Saccharomonospora glauca, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10147..10872
DNA (726bp) protein (242aa)
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI000377EA20
Methylase of polypeptide chain release factor {ECO:0000313|EMBL:EIE97725.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora glauca K62.;"
methylase of polypeptide chain release factors
PLM3-1_170_b1_sep16_scaffold_3455_14
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11007..12482
DNA (1476bp) protein (492aa)
Conserved carboxylase region Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I2U4_CLOCE
oxaloacetate decarboxylase
Conserved carboxylase region {ECO:0000313|EMBL:ACL76087.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
PLM3-1_170_b1_sep16_scaffold_3455_15

Not on your lists

12493..13044
DNA (552bp) protein (184aa)
Predicted protein Tax=Monosiga brevicollis RepID=A9UT75_MONBE
Uncharacterized protein {ECO:0000313|EMBL:KKM75559.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
biotin/lipoyl attachment domain-containing protein
PLM3-1_170_b1_sep16_scaffold_3455_16
unknown

Not on your lists

comp(13048..13269)
DNA (222bp) protein (74aa)
Uncharacterized protein Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R410_PIRSD
hypothetical protein
Displaying 16 items

View Taxonomy