ggKbase home page

PLM3-1_170_b1_sep16_scaffold_3476

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_3476_1

Not on your lists


1..507
DNA (507bp) protein (169aa)
50S ribosomal protein L13 Tax=Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) RepID=F0S115_DESTD
Uncharacterized protein {ECO:0000313|EMBL:KKL53044.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
50S ribosomal protein L13
PLM3-1_170_b1_sep16_scaffold_3476_2
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists


511..933
DNA (423bp) protein (141aa)
30S ribosomal protein S9 Tax=Chloroflexus RepID=A9WH97_CHLAA
30S ribosomal protein S9
Tax=RBG_13_Actinobacteria_63_9_curated
PLM3-1_170_b1_sep16_scaffold_3476_3

Not on your lists

comp(946..1260)
DNA (315bp) protein (105aa)
PemK-like protein; K07171 mRNA interferase [EC:3.1.-.-] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=bin7_NC10_sister organism_group=NC10
Marine sediment metagenome DNA, contig: S06H3_L01427 {ECO:0000313|EMBL:GAI04317.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
transcriptional modulator of MazE/toxin, MazF
PLM3-1_170_b1_sep16_scaffold_3476_4
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(1261..1527)
DNA (267bp) protein (89aa)
hypothetical protein bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
Tax=RBG_16_Chloroflexi_57_8_curated
PLM3-1_170_b1_sep16_scaffold_3476_5

Not on your lists

1685..2458
DNA (774bp) protein (258aa)
Halocyanin-like protein Tax=Haloferax elongans ATCC BAA-1513 RepID=M0HMD9_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KKK77403.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Copper binding protein, plastocyanin/azurin family
PLM3-1_170_b1_sep16_scaffold_3476_6
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

2496..3269
DNA (774bp) protein (258aa)
putative blue (type 1) copper domain protein
Blue (Type 1) copper domain protein bin=GWC2_Chloroflexi_73_18 species=unknown genus=Haloarcula taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=GWC2_RIF_CHLX_73_18_curated
PLM3-1_170_b1_sep16_scaffold_3476_7
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(3397..4329)
DNA (933bp) protein (311aa)
dly:Dehly_1064 bifunctional phosphoglucose/phosphomannose isomerase; K01809 mannose-6-phosphate isomerase [EC:5.3.1.8]; K01810 glucose-6-phosphate isomerase [EC:5.3.1.9] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
bifunctional phosphoglucose/phosphomannose isomerase
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_3476_8
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(4442..5863)
DNA (1422bp) protein (474aa)
atm:ANT_14720 phosphotransferase (EC:5.4.2.-) bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
phosphotransferase (EC:5.4.2.-)
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_3476_9
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(6374..7066)
DNA (693bp) protein (231aa)
nucleotidyl transferase bin=bin9_gal15 species=Streptomyces sp. AA1529 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
sugar-phosphate nucleotidyl transferase
Tax=RBG_16_Chloroflexi_68_14_curated
PLM3-1_170_b1_sep16_scaffold_3476_10
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

7303..7914
DNA (612bp) protein (204aa)
Putative GCN5-related N-acetyltransferase bin=GWC2_Proteo_65_14_Ab886 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
GCN5-related N-acetyltransferase
Tax=RBG_16_Chloroflexi_64_32_curated
Displaying 10 items

View Taxonomy