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PLM1_60_b1_redo_sep16_scaffold_363

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Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_363_1
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(559..1827)
DNA (1269bp) protein (423aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
tyrosyl-tRNA synthetase Tax=Actinomadura atramentaria RepID=UPI0003637D1F
PLM1_60_b1_redo_sep16_scaffold_363_2
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2174..2695)
DNA (522bp) protein (174aa)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
Putative 3-methyladenine DNA glycosylase Tax=Micromonospora sp. (strain L5) RepID=E8S357_MICSL
DNA-3-methyladenine glycosylase
PLM1_60_b1_redo_sep16_scaffold_363_3
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2773..4212)
DNA (1440bp) protein (480aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein Tax=Longispora albida RepID=UPI0003627A9D
putative argininosuccinate lyase
PLM1_60_b1_redo_sep16_scaffold_363_4
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4205..5476)
DNA (1272bp) protein (424aa)
Argininosuccinate synthase {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00013047}; EC=6.3.4.5 {ECO:0000256|HAMAP-Rule:MF_00005, ECO:0000256|SAAS:SAAS00009947};; Citrulline--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00005}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mobaraensis NBRC 13819 = DSM 40847.;"
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M2ZXH3_STRMB
PLM1_60_b1_redo_sep16_scaffold_363_5
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5505..6011)
DNA (507bp) protein (169aa)
Arginine repressor Tax=Micromonospora lupini str. Lupac 08 RepID=I0L1F0_9ACTO
Arginine repressor {ECO:0000256|HAMAP-Rule:MF_00173}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
arginine repressor
PLM1_60_b1_redo_sep16_scaffold_363_6
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6008..7021)
DNA (1014bp) protein (338aa)
argF; ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase, catabolic {ECO:0000256|HAMAP-Rule:MF_01109}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000313|EMBL:CCG03347.1};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
Ornithine carbamoyltransferase, catabolic Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RWD2_BLASD
PLM1_60_b1_redo_sep16_scaffold_363_7
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7018..8196)
DNA (1179bp) protein (393aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
Acetylornithine aminotransferase Tax=Micromonospora sp. ATCC 39149 RepID=C4RHU2_9ACTO
acetylornithine and succinylornithine aminotransferase
PLM1_60_b1_redo_sep16_scaffold_363_8
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8193..9125)
DNA (933bp) protein (311aa)
Acetylglutamate kinase {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245375}; EC=2.7.2.8 {ECO:0000256|HAMAP-Rule:MF_00082, ECO:0000256|SAAS:SAAS00245383};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000256|HAMAP-Rule:MF_00082}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F4L6_VERMA
PLM1_60_b1_redo_sep16_scaffold_363_9
Streptomyces leeuwenhoekii, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9145..10296)
DNA (1152bp) protein (384aa)
N-acetylglutamate synthase Tax=Streptomyces vitaminophilus RepID=UPI00036F1C64
N-acetylglutamate synthase
Glutamate N-acetyltransferase {ECO:0000313|EMBL:CQR64990.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces leeuwenhoekii.;"
PLM1_60_b1_redo_sep16_scaffold_363_10
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10334..11398)
DNA (1065bp) protein (355aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_00150};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_00150, ECO:0000256|SAAS:SAAS00137393};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00150}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
N-acetyl-gamma-glutamyl-phosphate reductase Tax=Actinokineospora enzanensis RepID=UPI00036E2560
PLM1_60_b1_redo_sep16_scaffold_363_11
Pseudomonas sp. FeS53a, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11450..12274
DNA (825bp) protein (275aa)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI00036877E7
Transcriptional regulator, AraC family {ECO:0000313|EMBL:KIV71191.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FeS53a.;"
putative transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_363_12
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12294..12974
DNA (681bp) protein (227aa)
AzlC family protein Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SLH9_NOCSJ
AzlC family protein
AzlC family protein {ECO:0000313|EMBL:ABL82664.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
PLM1_60_b1_redo_sep16_scaffold_363_13
Streptomyces griseoflavus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12971..13279
DNA (309bp) protein (103aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00037CCA32
Integral membrane protein {ECO:0000313|EMBL:EFL38746.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseoflavus Tu4000.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_363_14
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

comp(13426..13857)
DNA (432bp) protein (144aa)
hypothetical protein bin=bin9_gal15 species=unknown genus=Corynebacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
histidine triad (HIT) protein
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
PLM1_60_b1_redo_sep16_scaffold_363_15
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(14097..16571)
DNA (2475bp) protein (825aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
Phenylalanine--tRNA ligase beta subunit Tax=Micromonospora sp. (strain L5) RepID=E8S346_MICSL
phenylalanyl-tRNA synthetase subunit beta
PLM1_60_b1_redo_sep16_scaffold_363_16
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(16571..17638)
DNA (1068bp) protein (356aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S8R2_GEOOG
PLM1_60_b1_redo_sep16_scaffold_363_17
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17829..18407)
DNA (579bp) protein (193aa)
Uncharacterized protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0L8H7_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH20124.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_363_18
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18482..19294)
DNA (813bp) protein (271aa)
tRNA/rRNA methyltransferase Tax=Micromonospora sp. ATCC 39149 RepID=C4RHT2_9ACTO
rRNA methylase {ECO:0000313|EMBL:EXG81370.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
tRNA/rRNA methyltransferase
PLM1_60_b1_redo_sep16_scaffold_363_19
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(19324..19704)
DNA (381bp) protein (127aa)
50S ribosomal protein L20 Tax=Frankia sp. BMG5.12 RepID=UPI000367B0AC
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_363_20
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(19801..19995)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 Tax=Corynebacterium nuruki RepID=UPI000248565C
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
rpmI; 50S ribosomal protein L35
PLM1_60_b1_redo_sep16_scaffold_363_21
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20076..20624)
DNA (549bp) protein (183aa)
Translation initiation factor IF-3 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XIG8_NAKMY
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
infC; translation initiation factor IF-3
PLM1_60_b1_redo_sep16_scaffold_363_22
Amycolatopsis azurea, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20917..21267
DNA (351bp) protein (117aa)
Uncharacterized protein Tax=Amycolatopsis RepID=R4T5G2_AMYOR
hypothetical protein
RecA/RadA recombinase {ECO:0000313|EMBL:EMD24448.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis azurea DSM 43854.;"
PLM1_60_b1_redo_sep16_scaffold_363_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(21478..22014)
DNA (537bp) protein (179aa)
hypothetical protein Tax=Streptomyces sp. BoleA5 RepID=UPI0003732751
hypothetical protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM1_60_b1_redo_sep16_scaffold_363_24
Streptomyces rapamycinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22011..22364)
DNA (354bp) protein (118aa)
ArsR family transcriptional regulator Tax=Actinopolymorpha alba RepID=UPI0003786E82
ArsR family transcriptional regulator
ArsR family transcriptional regulator {ECO:0000313|EMBL:AGP54835.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rapamycinicus NRRL 5491.;"
PLM1_60_b1_redo_sep16_scaffold_363_25
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22430..23482)
DNA (1053bp) protein (351aa)
Peptidase M23 Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3Q5Q3_STANL
Metalloendopeptidase-like membrane protein {ECO:0000313|EMBL:EXG81365.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
peptidase M23
PLM1_60_b1_redo_sep16_scaffold_363_26
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23533..24108)
DNA (576bp) protein (192aa)
hypothetical protein Tax=Sciscionella marina RepID=UPI00037CB293
Uncharacterized protein {ECO:0000313|EMBL:EXG81364.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_363_27
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24157..26286)
DNA (2130bp) protein (710aa)
Putative uncharacterized protein Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8SAW3_ACTS5
Putative membrane protein {ECO:0000313|EMBL:EXG81363.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_363_28
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26286..29027)
DNA (2742bp) protein (914aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI000360D770
Uncharacterized protein {ECO:0000313|EMBL:EXG81362.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_363_29
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30407..30760)
DNA (354bp) protein (118aa)
Putative uncharacterized protein Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8SAW1_ACTS5
Uncharacterized protein {ECO:0000313|EMBL:EXG81359.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_363_30
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30764..31054)
DNA (291bp) protein (97aa)
Uncharacterized protein Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HJ22_ACTM4
Uncharacterized protein {ECO:0000313|EMBL:EXG81358.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
Displaying items 1-30 of 37 in total

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