ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_418

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_418_1
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..385
DNA (384bp) protein (128aa)
Uncharacterized protein Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K9H2_SACES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH33474.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
PLM1_60_b1_redo_sep16_scaffold_418_2
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

336..896
DNA (561bp) protein (187aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI000360B494
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH33474.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
PLM1_60_b1_redo_sep16_scaffold_418_3
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1026..1862)
DNA (837bp) protein (279aa)
Putative uncharacterized protein Tax=Micromonospora sp. ATCC 39149 RepID=C4RMQ0_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EEP71049.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
hydrolase, alpha/beta fold family protein
PLM1_60_b1_redo_sep16_scaffold_418_4
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1916..2614
DNA (699bp) protein (233aa)
Transcriptional regulator, tetR family Tax=Micromonospora lupini str. Lupac 08 RepID=I0L2M5_9ACTO
Transcriptional regulator, tetR family {ECO:0000313|EMBL:CCH18072.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
TetR family transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_418_5
Halostagnicola larsenii, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2946..3356
DNA (411bp) protein (137aa)
Bifunctional deaminase-reductase domain protein Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3PWL1_STANL
deaminase
Deaminase {ECO:0000313|EMBL:AHG02024.1}; species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.;" source="Halostagnicola larsenii XH-48.;"
PLM1_60_b1_redo_sep16_scaffold_418_6
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3287..3577)
DNA (291bp) protein (97aa)
Putative uncharacterized protein Tax=Micromonospora sp. ATCC 39149 RepID=C4RI44_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EEP70484.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_418_7
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4179..4781)
DNA (603bp) protein (201aa)
mini-circle protein Tax=Serinicoccus profundi RepID=UPI000255F898
Mini-circle protein {ECO:0000313|EMBL:KGM10143.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_418_8
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5238..5648
DNA (411bp) protein (137aa)
Putative glyoxalase/bleomycin resistance proteins and dioxygenase Tax=Micromonospora lupini str. Lupac 08 RepID=I0KVE1_9ACTO
Putative lactoylglutathione lyase {ECO:0000313|EMBL:EXG80601.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
glyoxalase family protein
PLM1_60_b1_redo_sep16_scaffold_418_9
Streptomyces sviceus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5811..7019)
DNA (1209bp) protein (403aa)
Galactosylceramidase (EC:3.2.1.46)
Putative uncharacterized protein Tax=Streptomyces sviceus ATCC 29083 RepID=B5I3U5_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EDY59750.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sviceus ATCC 29083.;"
PLM1_60_b1_redo_sep16_scaffold_418_10
Callorhinchus milii, Callorhinchus, Chimaeriformes, Holocephali, Chordata, Metazoa

Not on your lists

comp(7124..7288)
DNA (165bp) protein (55aa)
Uncharacterized protein Tax=Gasterosteus aculeatus RepID=G3PI40_GASAC
Galactocerebrosidase-like protein {ECO:0000313|EMBL:AFO96219.1}; Flags: Fragment;; species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus.;" source="Callorhinchus milii (Ghost shark).;"
Glycoside hydrolase family 59
PLM1_60_b1_redo_sep16_scaffold_418_11
Streptomyces rapamycinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7285..8163)
DNA (879bp) protein (293aa)
galactosylceramidase Tax=Streptomyces rapamycinicus RepID=UPI0003831756
galactosylceramidase
Galactosylceramidase {ECO:0000313|EMBL:AGP52118.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rapamycinicus NRRL 5491.;"
PLM1_60_b1_redo_sep16_scaffold_418_12
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9136..9324
DNA (189bp) protein (63aa)
Carbohydrate binding family 6 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y6J5_THEBD
Endo-1,3-beta-glucanase {ECO:0000313|EMBL:ETK33668.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
carbohydrate binding family 6
PLM1_60_b1_redo_sep16_scaffold_418_13
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9679..10671
DNA (993bp) protein (331aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BAJ8_STRRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ89828.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM1_60_b1_redo_sep16_scaffold_418_14
unknown

Not on your lists

comp(10699..10845)
DNA (147bp) protein (49aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_418_15
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11011..13830
DNA (2820bp) protein (940aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI00035F321A
Alpha-mannosidase {ECO:0000313|EMBL:KGI78130.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
alpha-mannosidase
PLM1_60_b1_redo_sep16_scaffold_418_16
Actinomyces massiliensis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14565..15995)
DNA (1431bp) protein (477aa)
Transporter, major facilitator family protein Tax=Actinomyces massiliensis F0489 RepID=J0N9G8_9ACTO
Transporter, major facilitator family protein {ECO:0000313|EMBL:EJF43574.1}; species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces massiliensis F0489.;"
EmrB/QacA subfamily drug resistance transporter
PLM1_60_b1_redo_sep16_scaffold_418_17
Amycolatopsis decaplanina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16063..16404)
DNA (342bp) protein (114aa)
Uncharacterized protein Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2YGP7_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:EME60890.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis decaplanina DSM 44594.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_418_18
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16516..17775)
DNA (1260bp) protein (420aa)
RNA polymerase subunit sigma-24 Tax=Amycolatopsis nigrescens RepID=UPI000374A2C1
RNA polymerase ECF-type sigma factor
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:BAH52758.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;"
PLM1_60_b1_redo_sep16_scaffold_418_19
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17772..18044)
DNA (273bp) protein (91aa)
hypothetical protein Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002628CD3
Uncharacterized protein {ECO:0000313|EMBL:CEL18651.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_418_20
Streptomyces zinciresistens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18173..19873)
DNA (1701bp) protein (567aa)
hypothetical protein Tax=Micromonospora sp. CNB394 RepID=UPI00036FACAD
Putative transposase for insertion sequence element {ECO:0000313|EMBL:EGX61540.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces zinciresistens K42.;"
putative transposase for insertion sequence element
PLM1_60_b1_redo_sep16_scaffold_418_21
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19978..20157)
DNA (180bp) protein (60aa)
Uncharacterized protein Tax=Amycolatopsis mediterranei RepID=G0FJV8_AMYMS
DGPF domain protein {ECO:0000313|EMBL:EWM10610.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_418_22
unknown

Not on your lists

comp(20952..21119)
DNA (168bp) protein (56aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_418_23
Frankia sp. BMG5.23, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21317..21649)
DNA (333bp) protein (111aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI0003633194
transposase
Transposase {ECO:0000313|EMBL:KDA41449.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. BMG5.23.;"
PLM1_60_b1_redo_sep16_scaffold_418_24
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22288..23097
DNA (810bp) protein (270aa)
hypothetical protein Tax=Frankia sp. BCU110501 RepID=UPI00037BE159
Phage integrase {ECO:0000313|EMBL:EWM15304.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
site-specific recombinase XerD
PLM1_60_b1_redo_sep16_scaffold_418_25
unknown

Not on your lists

comp(22955..23302)
DNA (348bp) protein (116aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_418_26
Actinomyces massiliensis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24101..25555)
DNA (1455bp) protein (485aa)
Transporter, major facilitator family protein Tax=Actinomyces massiliensis F0489 RepID=J0N9G8_9ACTO
Transporter, major facilitator family protein {ECO:0000313|EMBL:EJF43574.1}; species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces massiliensis F0489.;"
EmrB/QacA subfamily drug resistance transporter
PLM1_60_b1_redo_sep16_scaffold_418_27
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25665..26867)
DNA (1203bp) protein (401aa)
hypothetical protein Tax=Mycobacterium sp. 141 RepID=UPI00037450F3
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_418_28
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26864..27211)
DNA (348bp) protein (116aa)
Uncharacterized protein Tax=Streptomyces davawensis JCM 4913 RepID=K4R7K1_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK28684.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
PLM1_60_b1_redo_sep16_scaffold_418_29
Actinomyces odontolyticus, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27202..27750)
DNA (549bp) protein (183aa)
hypothetical protein Tax=Salinispora tropica RepID=UPI0003608709
Uncharacterized protein {ECO:0000313|EMBL:EDN79612.1}; species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces odontolyticus ATCC 17982.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_418_30
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28132..28614)
DNA (483bp) protein (161aa)
Activator of Hsp90 ATPase 1 family protein Tax=Actinoplanes friuliensis DSM 7358 RepID=U5WB12_9ACTO
activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:AGZ46182.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
Displaying items 1-30 of 44 in total

View Taxonomy