ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_418_18

Organism: PLM1_60_b1_sep16_Acidothermus_cellulolyticus_70_16

near complete RP 52 / 55 BSCG 50 / 51 MC: 1 ASCG 13 / 38 MC: 3
Location: comp(16516..17775)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 Tax=Amycolatopsis nigrescens RepID=UPI000374A2C1 similarity UNIREF
DB: UNIREF100
  • Identity: 74.4
  • Coverage: 414.0
  • Bit_score: 585
  • Evalue 2.30e-164
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 72.7
  • Coverage: 410.0
  • Bit_score: 571
  • Evalue 1.60e-160
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:BAH52758.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.7
  • Coverage: 410.0
  • Bit_score: 571
  • Evalue 8.10e-160

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodococcus opacus → Rhodococcus → Corynebacteriales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1260
ATGACGGACGGCTCGCCCGCGGGGACCATGGAGCGGGTCTATCGGGAGCACCGGGCGCGAATGCTCGCCGCGCTGGTGAGGGCGCTCGGCGACTTCGAGCTGGCCGAGGACGCGCTGCACGACGCGTGCGCGTTGGCGCTGCGTCGATGGCAGGACGAGGTGCCCGATGACCCTGTGGCGTGGCTGCTGACGGTGGCCCGCAACCGGGCGATCGACCAGCTGCGGCGTGCCCGGACAGCGCGCGCAAAGCAGGTACAGATCGAGGTGGGCGAGCCGCCGCGCGGCGCGGTGACGGCGACGACCGATTACGGCGAGGGTCGGCTGATCAGCGTTGGTGACGATCGGCTCAGCCTGATCTTCACGTGCTGCCACCCGGCGTTGTCGATGGACGCGCGGGTGGCCTTGACTCTGCAGGCGGTCGCGGGCATGACCGCGGCCCAGATCGCGCGGGTGTTTCTGATGGGCGAGCCCGCCATGGCGCAACGACTGGTCCGGGCGAAGCGGAAGATCCGCGACGCAGGAATCAACTTCGAGGTGCCCCCGGATCACCGGTTGCCCGAGCGTTTGGCCGGGGCGCTGGCGGTGGTCTATCTGGTGTTCACCCAGGGCTACACGGCACCTCGGGACACCGATGAGTATCGGCAGCTGCGTGCGGAGGCGATCCGGCTCGGGCGGCTGATCGCCACCTTGATGCCTGACGAGCCGGAAGCGCTCGGCCTCGTAGCGCTGATGCTGCTGCATGACTGCCGCAGCGACGCACGCTACACCGAGTCGGGTGATGTCGTGCTGCTCGAGGACCAGGACCGATCCCGGTGGGATCGGGCGCAGATCGCGGAAGGCGTCAGGCTGCTCGACCGGGCGCTGCGGCGCGGGATGCCCGGTCCTTATCAGTTGCAGGCGGCGATCGCTGCCGAGCATGCGCGGGCGGGCACGGCCGAGCAGACGGACTGGGTGGGAATCGCGGCGCTGTACGCCGAGCTGCTCGAGGCGGCGCCTTCGCCCGTGATGGCCCTCAACCGCGCCGTCGCGGTGGCCATGGCCGACGGCGCCGACGCCGGGCTCGAGCTGATCGAGCAGATCGACGGCTTGGAGCGCTACCACCTGCTGCACGCCGCCCGCGCGGACCTGTTACGCAGGCTAGGTAGGCGTGACGAGGCCGCCGTGGCGTACCGCCGGGCTCATGAGCTGGCCACCAATCCCGCCGACCGCCGCTTCCTCGCCGGGCGGCTCATCTCCCTGGACGATCCCGCGGCCGGATGA
PROTEIN sequence
Length: 420
MTDGSPAGTMERVYREHRARMLAALVRALGDFELAEDALHDACALALRRWQDEVPDDPVAWLLTVARNRAIDQLRRARTARAKQVQIEVGEPPRGAVTATTDYGEGRLISVGDDRLSLIFTCCHPALSMDARVALTLQAVAGMTAAQIARVFLMGEPAMAQRLVRAKRKIRDAGINFEVPPDHRLPERLAGALAVVYLVFTQGYTAPRDTDEYRQLRAEAIRLGRLIATLMPDEPEALGLVALMLLHDCRSDARYTESGDVVLLEDQDRSRWDRAQIAEGVRLLDRALRRGMPGPYQLQAAIAAEHARAGTAEQTDWVGIAALYAELLEAAPSPVMALNRAVAVAMADGADAGLELIEQIDGLERYHLLHAARADLLRRLGRRDEAAVAYRRAHELATNPADRRFLAGRLISLDDPAAG*