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PLM1_60_b1_redo_sep16_scaffold_476

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_476_1
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

46..783
DNA (738bp) protein (246aa)
ABC transporter permease Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VTL8_9ACTO
ABC transporter permease
Transport permease protein {ECO:0000256|RuleBase:RU361157}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM1_60_b1_redo_sep16_scaffold_476_2
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

885..1535
DNA (651bp) protein (217aa)
TetR family transcriptional regulator Tax=Salinispora arenicola RepID=UPI00037E4F5A
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABV99206.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM1_60_b1_redo_sep16_scaffold_476_3
unknown

Not on your lists

comp(1741..2043)
DNA (303bp) protein (101aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_476_4
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2102..2431)
DNA (330bp) protein (110aa)
Uncharacterized protein Tax=Actinoplanes sp. N902-109 RepID=R4LYQ3_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGL20375.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
PLM1_60_b1_redo_sep16_scaffold_476_5
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2428..3174)
DNA (747bp) protein (249aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
ribonuclease H (EC:3.1.26.4)
Ribonuclease HII Tax=Micromonospora lupini str. Lupac 08 RepID=I0KYC7_9ACTO
PLM1_60_b1_redo_sep16_scaffold_476_6
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3176..3643)
DNA (468bp) protein (156aa)
MutT/nudix-family hydrolase Tax=Actinoplanes sp. N902-109 RepID=R4LLY0_9ACTO
MutT/nudix-family hydrolase
MutT/nudix-family hydrolase {ECO:0000313|EMBL:AGL20377.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
PLM1_60_b1_redo_sep16_scaffold_476_7
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3684..4214)
DNA (531bp) protein (177aa)
NUDIX hydrolase Tax=Micromonospora RepID=D9T9A5_MICAI
nudix hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ADL46327.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_476_8
Actinoplanes sp. SE50/110, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4223..4843)
DNA (621bp) protein (207aa)
sip2; signal peptidase I (EC:3.4.21.89)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110).;"
Signal peptidase I Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8S069_ACTS5
PLM1_60_b1_redo_sep16_scaffold_476_9
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4972..7227)
DNA (2256bp) protein (752aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
Signal peptidase i Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FAK8_VERMA
signal peptidase i
PLM1_60_b1_redo_sep16_scaffold_476_10
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(7278..7634)
DNA (357bp) protein (119aa)
50S ribosomal protein L19 Tax=Modestobacter marinus (strain BC501) RepID=I4F2D6_MODMB
rplS; 50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM1_60_b1_redo_sep16_scaffold_476_11
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7746..8516)
DNA (771bp) protein (257aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
tRNA (guanine-N(1)-)-methyltransferase Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WEV6_ACTMD
PLM1_60_b1_redo_sep16_scaffold_476_12
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8513..9022)
DNA (510bp) protein (170aa)
Ribosome maturation factor RimM Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y7A9_THEBD
16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PLM1_60_b1_redo_sep16_scaffold_476_13
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9095..9331)
DNA (237bp) protein (79aa)
UPF0109 protein MODMU_4419 Tax=Modestobacter marinus (strain BC501) RepID=I4F2E0_MODMB
transcription elongation factor
UPF0109 protein MODMU_4419 {ECO:0000256|HAMAP-Rule:MF_00088}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM1_60_b1_redo_sep16_scaffold_476_14
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(9333..9782)
DNA (450bp) protein (150aa)
30S ribosomal protein S16 Tax=Modestobacter marinus (strain BC501) RepID=I4F2E1_MODMB
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
rpsP; 30S ribosomal protein S16
PLM1_60_b1_redo_sep16_scaffold_476_15
Intrasporangium calvum, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9955..11418)
DNA (1464bp) protein (488aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI000369C727
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU49827.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 /; NBRC 12989 / 7 KIP).;"
PLM1_60_b1_redo_sep16_scaffold_476_16
Streptomyces griseoaurantiacus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11499..12065)
DNA (567bp) protein (189aa)
Putative uncharacterized protein Tax=Streptomyces griseoaurantiacus M045 RepID=F3NC47_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EGG48935.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseoaurantiacus M045.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_476_17
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(12146..13558)
DNA (1413bp) protein (471aa)
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
Proline--tRNA ligase Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FAK1_VERMA
PLM1_60_b1_redo_sep16_scaffold_476_18
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13604..14656)
DNA (1053bp) protein (351aa)
hypothetical protein Tax=Micromonospora sp. CNB394 RepID=UPI00035C2E83
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ADL44943.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_476_19
Actinoplanes sp. SE50/110, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(14892..16421)
DNA (1530bp) protein (510aa)
Signal recognition particle protein Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8SJR3_ACTS5
ffh; signal recognition particle subunit SRP54
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110).;"
PLM1_60_b1_redo_sep16_scaffold_476_20
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16517..18721)
DNA (2205bp) protein (735aa)
Bifunctional uridylyltransferase/uridylyl-removing enzyme Tax=Actinoplanes sp. N902-109 RepID=R4LXL8_9ACTO
glnD; PII uridylyl-transferase
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|HAMAP-Rule:MF_00277, ECO:0000256|SAAS:SAAS00228994}; Short=UTase/UR {ECO:0000256|HAMAP-Rule:MF_00277};; Bifunctional [protein-PII] modification enzyme {ECO:0000256|HAMAP-Rule:MF_00277}; Bifunctional nitrogen sensor protein {ECO:0000256|HAMAP-Rule:MF_00277}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
PLM1_60_b1_redo_sep16_scaffold_476_21
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18711..19049)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WEW6_ACTMD
nitrogen regulatory protein P-II
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:ACU39741.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
PLM1_60_b1_redo_sep16_scaffold_476_22
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19046..20401)
DNA (1356bp) protein (452aa)
Ammonium transporter Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WEW7_ACTMD
ammonium transporter
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; Flags: Precursor;; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
PLM1_60_b1_redo_sep16_scaffold_476_23
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20608..22272
DNA (1665bp) protein (555aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI000360B721
TrkA-N domain-containing protein
TrkA-N domain protein {ECO:0000313|EMBL:ADB33992.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
PLM1_60_b1_redo_sep16_scaffold_476_24
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22498..23445
DNA (948bp) protein (316aa)
Uncharacterized protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0L899_9ACTO
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR61009.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_476_25
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23442..24260
DNA (819bp) protein (273aa)
Putative uncharacterized protein Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9T501_MICAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL47811.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_476_26
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24257..24757
DNA (501bp) protein (167aa)
hypothetical protein Tax=Micromonospora sp. CNB394 RepID=UPI000361E79C
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR62109.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_476_27
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24990..25778
DNA (789bp) protein (263aa)
Putative uncharacterized protein Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A4A4_THECD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY99978.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_60_b1_redo_sep16_scaffold_476_28
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25782..26570)
DNA (789bp) protein (263aa)
Aminoglycoside phosphotransferase Tax=Micromonospora RepID=D9SXJ4_MICAI
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR65527.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
aminoglycoside phosphotransferase
PLM1_60_b1_redo_sep16_scaffold_476_29
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26598..27722)
DNA (1125bp) protein (375aa)
Signal recognition particle receptor FtsY Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FAJ4_VERMA
signal recognition particle-docking protein FtsY
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM1_60_b1_redo_sep16_scaffold_476_30
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27948..28910
DNA (963bp) protein (321aa)
NADPH:quinone reductase Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002625AB9
NADPH:quinone reductase {ECO:0000313|EMBL:KDN18608.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
NADPH:quinone reductase and related Zn-dependent oxidoreductase
Displaying items 1-30 of 32 in total

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