ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_480

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_480_1
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..413)
DNA (411bp) protein (137aa)
Protein translocase subunit SecD Tax=Micromonospora lupini str. Lupac 08 RepID=I0L146_9ACTO
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
protein-export membrane protein SecD
PLM1_60_b1_redo_sep16_scaffold_480_2
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(479..892)
DNA (414bp) protein (138aa)
preprotein translocase subunit YajC Tax=Salinispora arenicola RepID=UPI00035EBD71
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EXG81304.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
preprotein translocase subunit YajC
PLM1_60_b1_redo_sep16_scaffold_480_3
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1037..2101)
DNA (1065bp) protein (355aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
Holliday junction ATP-dependent DNA helicase RuvB Tax=Micromonospora sp. ATCC 39149 RepID=C4RGT8_9ACTO
holliday junction DNA helicase ruvb
PLM1_60_b1_redo_sep16_scaffold_480_4
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2098..2700)
DNA (603bp) protein (201aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
Holliday junction ATP-dependent DNA helicase RuvA Tax=Actinoplanes sp. N902-109 RepID=R4LJM3_9ACTO
ruvA; Holliday junction DNA helicase RuvA
PLM1_60_b1_redo_sep16_scaffold_480_5
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2697..3272)
DNA (576bp) protein (192aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
Crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Holliday junction resolvase Tax=Actinomadura atramentaria RepID=UPI0003706C1B
PLM1_60_b1_redo_sep16_scaffold_480_6
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3378..4127)
DNA (750bp) protein (250aa)
Probable transcriptional regulatory protein STVIR_7197 Tax=Streptomyces viridochromogenes Tue57 RepID=L8P6T3_STRVR
Probable transcriptional regulatory protein CryarDRAFT_2410 {ECO:0000256|HAMAP-Rule:MF_00693}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
putative transcriptional regulatory protein
PLM1_60_b1_redo_sep16_scaffold_480_7
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4166..4771)
DNA (606bp) protein (202aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000256|HAMAP-Rule:MF_01615}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
Glutamine amidotransferase subunit PdxT Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W640_9ACTO
putative glutamine amidotransferase
PLM1_60_b1_redo_sep16_scaffold_480_8
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4845..5771)
DNA (927bp) protein (309aa)
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
pyridoxal biosynthesis lyase Tax=Actinopolymorpha alba RepID=UPI00035DDBE2
pyridoxal biosynthesis lyase pdxS
PLM1_60_b1_redo_sep16_scaffold_480_9
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5830..6381)
DNA (552bp) protein (184aa)
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI00036FB75E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHD76102.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
PLM1_60_b1_redo_sep16_scaffold_480_10
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6448..7626)
DNA (1179bp) protein (393aa)
phosphatidylinositol alpha-mannosyltransferase (EC:2.4.1.57)
Phosphatidylinositol alpha-mannosyltransferase Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8S5S6_ACTS5
Glycosyltransferase {ECO:0000313|EMBL:EXG81296.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
PLM1_60_b1_redo_sep16_scaffold_480_11
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7637..8560)
DNA (924bp) protein (308aa)
Lipid A biosynthesis lauroyl acyltransferase Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F2E5_VERMA
lipid A biosynthesis lauroyl acyltransferase
Lipid A biosynthesis lauroyl acyltransferase {ECO:0000313|EMBL:AEB44017.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM1_60_b1_redo_sep16_scaffold_480_12
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8557..9189)
DNA (633bp) protein (211aa)
CDP-alcohol phosphatidyltransferase Tax=Micromonospora sp. ATCC 39149 RepID=C4RGR6_9ACTO
Phosphatidylglycerophosphate synthase {ECO:0000313|EMBL:EXG81294.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
CDP-alcohol phosphatidyltransferase
PLM1_60_b1_redo_sep16_scaffold_480_13
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9434..11587
DNA (2154bp) protein (718aa)
Small GTP-binding protein Tax=Micromonospora sp. (strain L5) RepID=E8S0U0_MICSL
small GTP-binding protein
Small GTP-binding protein {ECO:0000313|EMBL:ADL45798.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_480_14
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11706..12467
DNA (762bp) protein (254aa)
Polysaccharide deacetylase Tax=Micromonospora lupini str. Lupac 08 RepID=I0LB44_9ACTO
Polysaccharide deacetylase {ECO:0000313|EMBL:CCH21041.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
polysaccharide deacetylase
PLM1_60_b1_redo_sep16_scaffold_480_15
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12437..12988)
DNA (552bp) protein (184aa)
Histidine triad (HIT) protein Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QJN0_CATAD
histidine triad (HIT) protein
Histidine triad (HIT) protein {ECO:0000313|EMBL:ACU71253.1}; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
PLM1_60_b1_redo_sep16_scaffold_480_16
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13054..13293)
DNA (240bp) protein (80aa)
UPI00028920E5 related cluster bin=CNBR_ACT species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACT organism_group=Actinobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACQ82113.1}; species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
PLM1_60_b1_redo_sep16_scaffold_480_17
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13363..15432)
DNA (2070bp) protein (690aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
Threonine--tRNA ligase Tax=Micromonospora lupini str. Lupac 08 RepID=I0L0W9_9ACTO
threonyl-tRNA synthetase
PLM1_60_b1_redo_sep16_scaffold_480_18
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15658..16554
DNA (897bp) protein (299aa)
Extracellular solute-binding protein family 3 Tax=Frankia sp. (strain EuI1c) RepID=E3JBY4_FRASU
family 3 extracellular solute-binding protein
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ADP82294.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM1_60_b1_redo_sep16_scaffold_480_19
Kitasatospora cheerisanensis, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16538..17377)
DNA (840bp) protein (280aa)
Putative methyltransferase Tax=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) RepID=E4NB86_KITSK
Methyltransferase type 11 {ECO:0000313|EMBL:KDN85566.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora cheerisanensis KCTC 2395.;"
putative methyltransferase
PLM1_60_b1_redo_sep16_scaffold_480_20
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17368..18234)
DNA (867bp) protein (289aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI000364E992
PLM1_60_b1_redo_sep16_scaffold_480_21
Intrasporangium calvum, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18590..19318)
DNA (729bp) protein (243aa)
GntR domain protein Tax=Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) RepID=E6SE29_INTC7
GntR family transcriptional regulator
GntR domain protein {ECO:0000313|EMBL:ADU47642.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 /; NBRC 12989 / 7 KIP).;"
PLM1_60_b1_redo_sep16_scaffold_480_22
Streptomyces sp. MUSC164, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19603..21087
DNA (1485bp) protein (495aa)
sugar transporter Tax=Streptomyces sp. LaPpAH-108 RepID=UPI0003655049
Permease {ECO:0000313|EMBL:KKA37431.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. MUSC164.;"
sugar transporter
PLM1_60_b1_redo_sep16_scaffold_480_23
Kocuria polaris, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21093..22553
DNA (1461bp) protein (487aa)
hypothetical protein Tax=Kocuria sp. UCD-OTCP RepID=UPI00036A9702
Uncharacterized protein {ECO:0000313|EMBL:KHD98251.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.;" source="Kocuria polaris.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_480_24
unknown

Not on your lists

22553..22675
DNA (123bp) protein (41aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_480_25
Kocuria polaris, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22675..23556
DNA (882bp) protein (294aa)
hypothetical protein Tax=Kocuria sp. UCD-OTCP RepID=UPI00035FE60A
3-hydroxyacid dehydrogenase {ECO:0000313|EMBL:KHD98252.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.;" source="Kocuria polaris.;"
beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase
PLM1_60_b1_redo_sep16_scaffold_480_26
Streptomyces sp. HGB0020, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23570..24028)
DNA (459bp) protein (153aa)
Uncharacterized protein Tax=Streptomyces sp. HGB0020 RepID=S2Y4R7_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EPD57225.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HGB0020.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_480_27
Saccharothrix sp. ST-888, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24104..24985
DNA (882bp) protein (294aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Streptomyces violaceusniger Tu 4113 RepID=G2NTM2_STRVO
RNA polymerase sigma 70 {ECO:0000313|EMBL:KJK55418.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix sp. ST-888.;"
ECF subfamily RNA polymerase sigma-24 subunit
PLM1_60_b1_redo_sep16_scaffold_480_28
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25374..25667)
DNA (294bp) protein (98aa)
Uncharacterized protein Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HCP6_ACTM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL90783.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64; / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431).;"
PLM1_60_b1_redo_sep16_scaffold_480_29
unknown

Not on your lists

25731..26027
DNA (297bp) protein (99aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_480_30
Microlunatus phosphovorus, Microlunatus, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26383..27030)
DNA (648bp) protein (216aa)
Two-component system response regulator Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XNB9_MICPN
two-component system response regulator
Two-component system response regulator {ECO:0000313|EMBL:BAK36569.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Microlunatus.;" source="Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 /; NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1).;"
Displaying items 1-30 of 34 in total

View Taxonomy