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PLM1_60_b1_redo_sep16_scaffold_503

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_503_1
Amycolatopsis azurea, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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3..176
DNA (174bp) protein (58aa)
hypothetical protein Tax=Nocardiopsis ganjiahuensis RepID=UPI000347383F
Uncharacterized protein {ECO:0000313|EMBL:EMD26168.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis azurea DSM 43854.;"
PLM1_60_b1_redo_sep16_scaffold_503_2
Streptomyces sp. RSD-27, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

300..590
DNA (291bp) protein (97aa)
Zinc finger domain-containing protein-containing protein Tax=Streptomyces sp. C RepID=D9VK22_9ACTO
Zinc finger UBP-type protein {ECO:0000313|EMBL:KIF07265.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. RSD-27.;"
glutathione-regulated potassium-efflux system
PLM1_60_b1_redo_sep16_scaffold_503_3
Desulfatitalea sp. BRH_c12, Desulfatitalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

633..1385
DNA (753bp) protein (251aa)
hypothetical protein Tax=Amycolatopsis alba RepID=UPI0003657FD2
Uncharacterized protein {ECO:0000313|EMBL:KJS28760.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatitalea.;" source="Desulfatitalea sp. BRH_c12.;"
SGNH hydrolase
PLM1_60_b1_redo_sep16_scaffold_503_4
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1331..3568)
DNA (2238bp) protein (746aa)
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI000362B971
Putative RND superfamily drug exporter {ECO:0000313|EMBL:EXG79611.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
MMPL domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_503_5
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3787..4701)
DNA (915bp) protein (305aa)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI000380485E
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AGZ44297.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM1_60_b1_redo_sep16_scaffold_503_6
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(4884..5879)
DNA (996bp) protein (332aa)
hypothetical protein Tax=Salinispora arenicola RepID=UPI0003795C2E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABV96160.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM1_60_b1_redo_sep16_scaffold_503_7
Edwardsiella tarda, Edwardsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5976..6296)
DNA (321bp) protein (107aa)
Uncharacterized protein Tax=Edwardsiella tarda RepID=D0ZE80_EDWTE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY83811.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Edwardsiella.;" source="Edwardsiella tarda (strain EIB202).;"
PLM1_60_b1_redo_sep16_scaffold_503_8
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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7481..8614
DNA (1134bp) protein (378aa)
Agmatinase Tax=Frankia sp. CN3 RepID=G6HCU0_9ACTO
Agmatinase {ECO:0000313|EMBL:ETK32478.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
arginase/agmatinase family protein
PLM1_60_b1_redo_sep16_scaffold_503_9
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8643..9656
DNA (1014bp) protein (338aa)
Sulfonate/nitrate/taurine transport system substrate-binding protein Tax=Amycolatopsis orientalis HCCB10007 RepID=R4T4M8_AMYOR
Sulfonate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDN23950.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
sulfonate ABC transporter substrate-binding protein
PLM1_60_b1_redo_sep16_scaffold_503_10
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9662..10552
DNA (891bp) protein (297aa)
Permease component of ABC-type sulfonate/nitrate/taurine transport system Tax=Amycolatopsis mediterranei RepID=D8HKJ6_AMYMU
ABC transporter permease {ECO:0000313|EMBL:KDN23951.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
ssuC; sulfonate/nitrate/taurine ABC transporter permease
PLM1_60_b1_redo_sep16_scaffold_503_11
Amycolatopsis decaplanina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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10543..11337
DNA (795bp) protein (265aa)
Sulfonate/nitrate/taurine ABC transporter ATPase Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2X0D6_9PSEU
Sulfonate/nitrate/taurine ABC transporter ATPase {ECO:0000313|EMBL:EME54491.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis decaplanina DSM 44594.;"
nrtD; Putative nitrate transport ATP-binding protein NrtD
PLM1_60_b1_redo_sep16_scaffold_503_12
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11377..12597
DNA (1221bp) protein (407aa)
Uncharacterized protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0LD00_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH21697.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_503_13
Amycolatopsis decaplanina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12584..15103
DNA (2520bp) protein (840aa)
Two-component system sensor kinase Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2YIG2_9PSEU
Two-component system sensor kinase {ECO:0000313|EMBL:EME54492.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis decaplanina DSM 44594.;"
Conserved putative membrane protein
PLM1_60_b1_redo_sep16_scaffold_503_14
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15100..15534
DNA (435bp) protein (145aa)
Roadblock/LC7 family protein Tax=Amycolatopsis RepID=D8HKJ3_AMYMU
roadblock/LC7 family protein
Roadblock/LC7 family protein {ECO:0000313|EMBL:EOD69593.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;"
PLM1_60_b1_redo_sep16_scaffold_503_15
Amycolatopsis azurea, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15540..15989
DNA (450bp) protein (150aa)
Uncharacterized protein Tax=Amycolatopsis azurea DSM 43854 RepID=M2NWV2_9PSEU
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EMD27064.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis azurea DSM 43854.;"
PLM1_60_b1_redo_sep16_scaffold_503_16
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15967..16581
DNA (615bp) protein (205aa)
ATP-binding protein Tax=Amycolatopsis balhimycina RepID=UPI00036368C3
ATP-binding protein {ECO:0000313|EMBL:KDN23956.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
ATP/GTP-binding protein
PLM1_60_b1_redo_sep16_scaffold_503_17
Streptomyces sp. CNQ-509, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16600..17220)
DNA (621bp) protein (207aa)
low molecular weight phosphotyrosine protein phosphatase (EC:3.1.3.48)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI00035EA82C
Protein tyrosine phosphatase {ECO:0000313|EMBL:AKH84894.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
PLM1_60_b1_redo_sep16_scaffold_503_18
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17259..18656)
DNA (1398bp) protein (466aa)
Capsular exopolysaccharide biosynthesis protein Tax=Saccharomonospora marina XMU15 RepID=H5X2J6_9PSEU
Capsular exopolysaccharide biosynthesis protein {ECO:0000313|EMBL:EHR49861.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
tyrosine-protein kinase
PLM1_60_b1_redo_sep16_scaffold_503_19
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18738..19841
DNA (1104bp) protein (368aa)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
GDP-mannose 4,6-dehydratase Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AYU1_STRRD
GDP-mannose 4,6-dehydratase
PLM1_60_b1_redo_sep16_scaffold_503_20
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19861..21702
DNA (1842bp) protein (614aa)
Polysaccharide biosynthesis protein CapD Tax=Frankia sp. (strain EAN1pec) RepID=A8L7S0_FRASN
polysaccharide biosynthesis protein CapD
Polysaccharide biosynthesis protein CapD {ECO:0000313|EMBL:ABW10725.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_503_21
Streptomyces turgidiscabies, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21707..22771)
DNA (1065bp) protein (355aa)
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:ELP64792.1}; EC=5.1.3.14 {ECO:0000313|EMBL:ELP64792.1};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces turgidiscabies Car8.;"
UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
UDP-N-acetylglucosamine 2-epimerase Tax=Streptomyces turgidiscabies Car8 RepID=L7F0H1_9ACTO
PLM1_60_b1_redo_sep16_scaffold_503_22
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22879..23901
DNA (1023bp) protein (341aa)
Glycosyl transferase family 4 Tax=Frankia sp. (strain EAN1pec) RepID=A8L037_FRASN
glycosyl transferase family protein
Glycosyl transferase family 4 {ECO:0000313|EMBL:ABW11597.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_503_23
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23901..25181
DNA (1281bp) protein (427aa)
Glycosyl transferase group 1 Tax=Frankia sp. EUN1f RepID=D3CTW6_9ACTO
Glycosyltransferase {ECO:0000313|EMBL:KJE25630.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
glycosyl transferase
PLM1_60_b1_redo_sep16_scaffold_503_24
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25178..26050
DNA (873bp) protein (291aa)
Nucleoside-diphosphate-sugar epimerase Tax=Saccharomonospora marina XMU15 RepID=H5WYS6_9PSEU
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:EHR51798.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
NAD-dependent epimerase/dehydratase
PLM1_60_b1_redo_sep16_scaffold_503_25
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26041..27663
DNA (1623bp) protein (541aa)
Uncharacterized protein Tax=Saccharomonospora marina XMU15 RepID=H5WYS7_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:EHR51799.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
heparinase II/III family protein
PLM1_60_b1_redo_sep16_scaffold_503_26
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27660..29795
DNA (2136bp) protein (712aa)
Putative dehydrogenase Tax=Saccharomonospora marina XMU15 RepID=H5WYS8_9PSEU
Putative dehydrogenase {ECO:0000313|EMBL:EHR51800.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
zinc-binding dehydrogenase
PLM1_60_b1_redo_sep16_scaffold_503_27
R_Omnitrophica_45_10b, Omnitrophica, Bacteria

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30118..31044
DNA (927bp) protein (309aa)
hypothetical protein Tax=Holospora undulata RepID=UPI0003303FE7
type 11 methyltransferase
Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_45_10b_curated
PLM1_60_b1_redo_sep16_scaffold_503_28
unknown

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comp(31149..31346)
DNA (198bp) protein (66aa)

This feature has no annotations

Displaying 28 items

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