ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_600

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_600_1
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..323
DNA (321bp) protein (107aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI0003615440
Uncharacterized protein {ECO:0000313|EMBL:EWT02189.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
phospholipid-binding protein, PBP family
PLM1_60_b1_redo_sep16_scaffold_600_2
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

759..1091
DNA (333bp) protein (111aa)
hypothetical protein Tax=Saccharopolyspora spinosa RepID=UPI000237A7D2
Lsr2 family protein {ECO:0000313|EMBL:EXG79394.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
lsr2; iron-regulated LSR2 protein precursor
PLM1_60_b1_redo_sep16_scaffold_600_3
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1657..3180
DNA (1524bp) protein (508aa)
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI00037194B9
Ricin B lectin
Ricin B lectin {ECO:0000313|EMBL:ABV98955.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM1_60_b1_redo_sep16_scaffold_600_4
Pimelobacter simplex, Pimelobacter, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3286..4554)
DNA (1269bp) protein (423aa)
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:AIY16556.1}; EC=3.1.4.46 {ECO:0000313|EMBL:AIY16556.1};; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Pimelobacter.;" source="Nocardioides simplex (Arthrobacter simplex).;"
hypothetical protein Tax=Frankia sp. BMG5.12 RepID=UPI000368ABBA
endonuclease
PLM1_60_b1_redo_sep16_scaffold_600_5
unknown

Not on your lists

5132..5662
DNA (531bp) protein (177aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_600_6
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5743..6045)
DNA (303bp) protein (101aa)
Putative uncharacterized protein Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YGI9_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ25375.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_600_7
Streptomyces afghaniensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6203..6538)
DNA (336bp) protein (112aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00035E9359
Uncharacterized protein {ECO:0000313|EMBL:EPJ37758.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces afghaniensis 772.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_600_8
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8089..9294
DNA (1206bp) protein (402aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI000368DBFD
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:AIJ25391.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM1_60_b1_redo_sep16_scaffold_600_9
Streptomyces lomondensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9551..10957
DNA (1407bp) protein (469aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI0003734495
FAD-binding monooxygenase {ECO:0000313|EMBL:AKC91610.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lomondensis.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_600_10
Saccharomonospora viridis, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11216..12007
DNA (792bp) protein (264aa)
Transcriptional regulator Tax=Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101) RepID=C7MUH6_SACVD
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ACU97652.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 /; NBRC 12207 / P101).;"
PLM1_60_b1_redo_sep16_scaffold_600_11
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12012..12470)
DNA (459bp) protein (153aa)
Uncharacterized protein Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HCY4_ACTM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL90871.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64; / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431).;"
PLM1_60_b1_redo_sep16_scaffold_600_12
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12467..13990)
DNA (1524bp) protein (508aa)
O-succinylbenzoate-CoA ligase Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WC95_9ACTO
O-succinylbenzoate-CoA ligase {ECO:0000313|EMBL:EFL27143.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
AMP-dependent synthetase
PLM1_60_b1_redo_sep16_scaffold_600_13
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13998..14876)
DNA (879bp) protein (293aa)
Amidohydrolase Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WC94_9ACTO
Amidohydrolase {ECO:0000313|EMBL:EFL27142.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
amidohydrolase 2
PLM1_60_b1_redo_sep16_scaffold_600_14
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14879..15790)
DNA (912bp) protein (304aa)
Short chain dehydrogenase/reductase family oxidoreductase Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WC93_9ACTO
Short chain dehydrogenase/reductase family oxidoreductase {ECO:0000313|EMBL:EFL27141.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
3-oxoacyl-ACP reductase
PLM1_60_b1_redo_sep16_scaffold_600_15
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15825..17174)
DNA (1350bp) protein (450aa)
Transporter Tax=Streptomyces bottropensis ATCC 25435 RepID=M3FDB6_9ACTO
MFS transporter {ECO:0000313|EMBL:KFF94700.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabiei.;"
transporter
PLM1_60_b1_redo_sep16_scaffold_600_16
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17322..17882
DNA (561bp) protein (187aa)
MarR family transcriptional regulator Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WC92_9ACTO
MarR family transcriptional regulator {ECO:0000313|EMBL:EFL27140.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_600_17
Streptomyces ipomoeae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18000..18380)
DNA (381bp) protein (127aa)
alpha/beta hydrolase Tax=Streptomyces RepID=UPI00037858B5
Oxidoreductase
Hydrolase, alpha/beta domain protein {ECO:0000313|EMBL:EKX62070.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ipomoeae 91-03.;"
PLM1_60_b1_redo_sep16_scaffold_600_18
Deinococcus peraridilitoris, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(18508..19068)
DNA (561bp) protein (187aa)
Acetyltransferase Tax=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) RepID=K9ZZN2_DEIPD
acetyltransferase
Acetyltransferase {ECO:0000313|EMBL:AFZ66402.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416; / KR-200).;"
PLM1_60_b1_redo_sep16_scaffold_600_19
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19240..19704
DNA (465bp) protein (155aa)
hypothetical protein Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI000365955B
Uncharacterized protein {ECO:0000313|EMBL:EWT04283.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
PLM1_60_b1_redo_sep16_scaffold_600_20
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19877..20374
DNA (498bp) protein (166aa)
Heat shock protein Tax=Saccharopolyspora erythraea RepID=A4FFV8_SACEN
hsp18; heat shock protein
Heat shock protein {ECO:0000313|EMBL:CAM02933.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
PLM1_60_b1_redo_sep16_scaffold_600_21
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20396..21040)
DNA (645bp) protein (215aa)
LuxR family transcriptional regulator Tax=Streptomyces scabrisporus RepID=UPI00035E855D
LuxR family two component transcriptional regulator
LuxR family transcriptional regulator {ECO:0000313|EMBL:ETK35074.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
PLM1_60_b1_redo_sep16_scaffold_600_22
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20992..22278)
DNA (1287bp) protein (429aa)
Histidine kinase Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7BZI4_STRBB
histidine kinase
Histidine kinase {ECO:0000313|EMBL:ADI09889.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
PLM1_60_b1_redo_sep16_scaffold_600_23
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22535..22900)
DNA (366bp) protein (122aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI00036269D5
Micromonospora carbonacea strain JXNU-1 contig2, whole genome shotgun sequence {ECO:0000313|EMBL:KIR63112.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_600_24
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23055..23393
DNA (339bp) protein (113aa)
Uncharacterized protein {ECO:0000313|EMBL:ETK36313.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
PLM1_60_b1_redo_sep16_scaffold_600_25
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23416..23637
DNA (222bp) protein (74aa)
Putative uncharacterized protein Tax=Micromonospora sp. ATCC 39149 RepID=C4REI4_9ACTO
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR65773.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_600_26
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23718..25154
DNA (1437bp) protein (479aa)
hypothetical protein Tax=Actinokineospora enzanensis RepID=UPI0003702A3B
Putative fatty acid synthase {ECO:0000313|EMBL:EWC58163.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_600_27
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25193..26140)
DNA (948bp) protein (316aa)
Putative uncharacterized protein Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QGC0_CATAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU72965.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
PLM1_60_b1_redo_sep16_scaffold_600_28
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

26212..27123
DNA (912bp) protein (304aa)
Transcriptional regulator, LysR family Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3PVP6_STANL
LysR family transcriptional regulator
Tax=BJP_IG2102_Coriobacteriales_64_17
PLM1_60_b1_redo_sep16_scaffold_600_29
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27260..27910
DNA (651bp) protein (217aa)
Uncharacterized protein Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6W9J4_ACTMD
Uncharacterized protein {ECO:0000313|EMBL:EXG81870.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_600_30
Streptomyces auratus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28013..29020
DNA (1008bp) protein (336aa)
Uncharacterized protein Tax=Streptomyces auratus AGR0001 RepID=J2JUB0_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EJJ03675.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces auratus AGR0001.;"
transcriptional regulator
Displaying items 1-30 of 45 in total

View Taxonomy