ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_657

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_657_1
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(98..946)
DNA (849bp) protein (283aa)
Transcriptional regulator, XRE family Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A2K2_THECD
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACY96022.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_60_b1_redo_sep16_scaffold_657_2
Nocardia cyriacigeorgica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(930..1445)
DNA (516bp) protein (172aa)
Uncharacterized protein Tax=Nocardia cyriacigeorgica (strain GUH-2) RepID=H6R1P6_NOCCG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCF61780.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia cyriacigeorgica (strain GUH-2).;"
PLM1_60_b1_redo_sep16_scaffold_657_3
unknown

Not on your lists

comp(1426..1638)
DNA (213bp) protein (71aa)
hypothetical protein Tax=Streptomyces prunicolor RepID=UPI0003805A87
PLM1_60_b1_redo_sep16_scaffold_657_4
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2210..2908
DNA (699bp) protein (233aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI0003632B46
hydrolase
Haloacid dehalogenase domain protein hydrolase {ECO:0000313|EMBL:ABV98999.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM1_60_b1_redo_sep16_scaffold_657_5
Streptomyces sp. C, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2846..3667)
DNA (822bp) protein (274aa)
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI00037DCA01
Predicted protein {ECO:0000313|EMBL:EFL17628.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. C.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_657_6
Streptomyces natalensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3915..4460
DNA (546bp) protein (182aa)
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI00037CF3A4
Phosphohydrolase {ECO:0000313|EMBL:KIZ18565.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces natalensis ATCC 27448.;"
metal dependent phosphohydrolase
PLM1_60_b1_redo_sep16_scaffold_657_7
Streptomyces sp. PCS3-D2, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4450..4920)
DNA (471bp) protein (157aa)
NUDIX hydrolase Tax=Salinispora arenicola RepID=UPI0003766BCA
NUDIX hydrolase {ECO:0000313|EMBL:EYU67814.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PCS3-D2.;"
MutT protein
PLM1_60_b1_redo_sep16_scaffold_657_8
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4924..5694)
DNA (771bp) protein (257aa)
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI00036C8407
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK27601.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
PLM1_60_b1_redo_sep16_scaffold_657_9
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7366..7911
DNA (546bp) protein (182aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI00035FAE75
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW09866.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_657_10
Streptomyces sp. Tu 6176, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7892..8737
DNA (846bp) protein (282aa)
Putative transcriptional regulator Tax=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) RepID=E4N8G4_KITSK
Transcriptional regulator {ECO:0000313|EMBL:EYT80973.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Tu 6176.;"
putative transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_657_11
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8734..9942
DNA (1209bp) protein (403aa)
peptidase dimerization protein Tax=Amycolatopsis alba RepID=UPI00037F3E0C
Peptidase {ECO:0000313|EMBL:EWM15261.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
peptidase M20/M25/M40 family protein
PLM1_60_b1_redo_sep16_scaffold_657_12
Streptomyces leeuwenhoekii, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10071..11174
DNA (1104bp) protein (368aa)
hypothetical protein Tax=Actinoalloteichus spitiensis RepID=UPI000363675B
Alanine dehydrogenase {ECO:0000313|EMBL:CQR59553.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces leeuwenhoekii.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_657_13
unknown

Not on your lists

11171..11938
DNA (768bp) protein (256aa)
PLM1_60_b1_redo_sep16_scaffold_657_14
Streptomyces leeuwenhoekii, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11935..12621
DNA (687bp) protein (229aa)
hypothetical protein Tax=Actinoalloteichus spitiensis RepID=UPI00036DB460
Uncharacterized protein {ECO:0000313|EMBL:CQR59555.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces leeuwenhoekii.;"
PLM1_60_b1_redo_sep16_scaffold_657_15
Firmicutes bacterium CAG:822, Firmicutes, Bacteria

Not on your lists

12618..13724
DNA (1107bp) protein (369aa)
hypothetical protein Tax=Frankia sp. BCU110501 RepID=UPI0003671718
Uncharacterized protein {ECO:0000313|EMBL:CCY47030.1}; species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:822.;"
PLM1_60_b1_redo_sep16_scaffold_657_16
Nocardiopsis alba, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13718..14155
DNA (438bp) protein (146aa)
Adenosylmethionine decarboxylase {ECO:0000256|SAAS:SAAS00093036}; EC=4.1.1.50 {ECO:0000256|SAAS:SAAS00093036};; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis alba (strain ATCC BAA-2165 / BE74).;"
hypothetical protein Tax=Actinoalloteichus spitiensis RepID=UPI00036F126C
S-adenosylmethionine decarboxylase family protein
PLM1_60_b1_redo_sep16_scaffold_657_17
unknown

Not on your lists

14167..14328
DNA (162bp) protein (54aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_657_18
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14424..16697
DNA (2274bp) protein (758aa)
hypothetical protein, partial Tax=Actinoalloteichus spitiensis RepID=UPI00036F7971
signal transduction histidine kinase-like protein
Signal transduction histidine kinase-like protein {ECO:0000313|EMBL:ACZ84810.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM1_60_b1_redo_sep16_scaffold_657_19
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16774..17238
DNA (465bp) protein (155aa)
Roadblock/LC7 family protein Tax=Actinoplanes sp. N902-109 RepID=R4LB32_9ACTO
Dynein regulation protein LC7 {ECO:0000313|EMBL:KHD73737.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
roadblock/LC7 family protein
PLM1_60_b1_redo_sep16_scaffold_657_20
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17235..18509
DNA (1275bp) protein (425aa)
Imidazolonepropionase (EC:3.5.2.7)
Putative Imidazolonepropionase Tax=Modestobacter marinus (strain BC501) RepID=I4F0A0_MODMB
Hydrolase {ECO:0000313|EMBL:KGH45171.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
PLM1_60_b1_redo_sep16_scaffold_657_21
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18557..19606
DNA (1050bp) protein (350aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2MZJ1_9ACTO
NMT1/THI5 like domain-containing protein
NMT1/THI5 like domain protein {ECO:0000313|EMBL:ACZ00191.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_60_b1_redo_sep16_scaffold_657_22
Streptomyces sp. WM6386, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19603..20445
DNA (843bp) protein (281aa)
ABC-type transporter, integral membrane subunit Tax=Streptomyces violaceusniger Tu 4113 RepID=G2NUI1_STRVO
ABC transporter permease {ECO:0000313|EMBL:KKD05433.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. WM6386.;"
ABC transporter permease
PLM1_60_b1_redo_sep16_scaffold_657_23
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20442..21329
DNA (888bp) protein (296aa)
Permease component of ABC-type nitrate/sulfonate/bicarbonate transport system Tax=Amycolatopsis mediterranei RepID=D8HJF9_AMYMU
ssuC; nitrate/sulfonate/bicarbonate ABC transporter permease
Nitrate/sulfonate/bicarbonate ABC transporter permease {ECO:0000313|EMBL:AEK47228.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
PLM1_60_b1_redo_sep16_scaffold_657_24
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21329..22147
DNA (819bp) protein (273aa)
ABC transporter related Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WA51_ACTMD
Putative nitrate ABC transporter, ATP-binding protein,putative {ECO:0000313|EMBL:EWC58718.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
ABC transporter
PLM1_60_b1_redo_sep16_scaffold_657_25
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22144..23547
DNA (1404bp) protein (468aa)
Uncharacterized protein Tax=Micromonospora sp. (strain L5) RepID=E8S1E2_MICSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB42590.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM1_60_b1_redo_sep16_scaffold_657_26
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23562..24011)
DNA (450bp) protein (150aa)
Uncharacterized protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FGX5_VERMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB42589.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM1_60_b1_redo_sep16_scaffold_657_27
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24041..24622
DNA (582bp) protein (194aa)
Metal-dependent phosphohydrolase hd sub domain protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FGX4_VERMA
metal-dependent phosphohydrolase hd sub domain-containing protein
Metal-dependent phosphohydrolase hd sub domain protein {ECO:0000313|EMBL:AEB42588.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
PLM1_60_b1_redo_sep16_scaffold_657_28
Streptomyces pluripotens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24619..25560
DNA (942bp) protein (314aa)
aminoglycoside phosphotransferase Tax=Streptomyces sp. CcalMP-8W RepID=UPI00036C9AC2
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:KIE36364.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pluripotens.;"
putative aminoglycoside phosphotransferase,antibiotic resistance protein
PLM1_60_b1_redo_sep16_scaffold_657_29
unknown

Not on your lists

comp(25897..26268)
DNA (372bp) protein (124aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_657_30
Streptomyces tsukubaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26812..26901
DNA (90bp) protein (30aa)
Transposase Tax=Streptomyces tsukubaensis NRRL18488 RepID=I2N9Q5_9ACTO
Transposase {ECO:0000313|EMBL:EIF93752.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces tsukubaensis NRRL18488.;"
transposase IS4 family protein
Displaying 30 items

View Taxonomy