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PLM1_60_b1_redo_sep16_scaffold_2611

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_2611_1
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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1..132
DNA (132bp) protein (44aa)
protein iolH Tax=Nocardiopsis chromatogenes RepID=UPI0003457600
Uncharacterized protein {ECO:0000313|EMBL:EST36035.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
xylose isomerase domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_2611_2
Rhodococcus sp. JVH1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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126..1124
DNA (999bp) protein (333aa)
Xylose isomerase-like TIM barrel family protein Tax=Rhodococcus sp. JVH1 RepID=J1RCJ6_9NOCA
Xylose isomerase-like TIM barrel family protein {ECO:0000313|EMBL:EJI95881.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. JVH1.;"
Uncharacterized protein yfiH
PLM1_60_b1_redo_sep16_scaffold_2611_3
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(1171..1872)
DNA (702bp) protein (234aa)
peptidase S1 Tax=Salinispora arenicola RepID=UPI00035CEBD5
peptidase S1 and S6 chymotrypsin/Hap
Peptidase S1 and S6 chymotrypsin/Hap {ECO:0000313|EMBL:ABV96091.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM1_60_b1_redo_sep16_scaffold_2611_4
Volvox carteri, Volvox, Chlamydomonadales, Chlorophyceae, Chlorophyta, Viridiplantae

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2570..3475
DNA (906bp) protein (302aa)
Protein TolA Tax=Escherichia coli RepID=A7ZJC1_ECO24
Putative uncharacterized protein {ECO:0000313|EMBL:EFJ39025.1}; Flags: Fragment;; species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox.;" source="Volvox carteri (Green alga).;"
tolA; TolA protein
PLM1_60_b1_redo_sep16_scaffold_2611_5
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3537..4235)
DNA (699bp) protein (233aa)
Transcriptional regulator, TetR family Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PRU7_KRIFD
TetR family transcription regulator
TetR family transcription regulator {ECO:0000313|EMBL:AHH94683.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM1_60_b1_redo_sep16_scaffold_2611_6
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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4367..4828
DNA (462bp) protein (154aa)
Uncharacterized protein Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CVK7_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA24182.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM1_60_b1_redo_sep16_scaffold_2611_7
unknown

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comp(4963..5217)
DNA (255bp) protein (85aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2611_8
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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5557..5763
DNA (207bp) protein (69aa)
hypothetical protein Tax=Saccharopolyspora spinosa RepID=UPI00023797CA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIJ26343.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM1_60_b1_redo_sep16_scaffold_2611_9
Nocardiopsis alba, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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5760..6305
DNA (546bp) protein (182aa)
Uncharacterized protein Tax=Nocardiopsis alba (strain ATCC BAA-2165 / BE74) RepID=J7KYW9_NOCAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFR05721.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis alba (strain ATCC BAA-2165 / BE74).;"
PLM1_60_b1_redo_sep16_scaffold_2611_10
Nocardia nova, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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6313..7173
DNA (861bp) protein (287aa)
hypothetical protein Tax=Nocardiopsis chromatogenes RepID=UPI000348B943
putative DNA-binding protein
Putative DNA-binding protein {ECO:0000313|EMBL:AHH19639.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia nova SH22a.;"
PLM1_60_b1_redo_sep16_scaffold_2611_11
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(7160..8242)
DNA (1083bp) protein (361aa)
Putative signaling protein Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W2B6_9ACTO
putative signaling protein
Putative signaling protein {ECO:0000313|EMBL:AGZ43383.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM1_60_b1_redo_sep16_scaffold_2611_12
unknown

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8404..9054
DNA (651bp) protein (217aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2611_13
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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9302..9691
DNA (390bp) protein (130aa)
Anti-sigma factor antagonist Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RUU2_BLASD
Anti-anti-sigma regulatory factor (Antagonist of anti-sigma factor) {ECO:0000313|EMBL:EXG79307.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
anti-sigma-factor antagonist
PLM1_60_b1_redo_sep16_scaffold_2611_14
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(9727..11808)
DNA (2082bp) protein (694aa)
Protein serine phosphatase with gaf(S) sensor(S) Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FCH0_VERMA
Stage II sporulation protein E (SpoIIE) {ECO:0000313|EMBL:EXG80150.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
protein serine phosphatase with gaf(s) sensor(s)
PLM1_60_b1_redo_sep16_scaffold_2611_15
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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11987..12817
DNA (831bp) protein (277aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
GAF sensor hybrid histidine kinase (EC:2.7.3.-)
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI00037E08EE
PLM1_60_b1_redo_sep16_scaffold_2611_16
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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12775..12960
DNA (186bp) protein (62aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI00037E08EE
GAF sensor hybrid histidine kinase
Displaying 16 items

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