ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

PLM1_60_b1_redo_sep16_scaffold_10059_1

Organism: PLM1_60_b1_sep16_Acidothermus_cellulolyticus_70_16

near complete RP 52 / 55 BSCG 50 / 51 MC: 1 ASCG 13 / 38 MC: 3
Location: 3..497

Top 3 Functional Annotations

Value Algorithm Source
Integrase catalytic region Tax=Frankia sp. (strain EAN1pec) RepID=A8KXN2_FRASN similarity UNIREF
DB: UNIREF100
  • Identity: 62.1
  • Coverage: 161.0
  • Bit_score: 194
  • Evalue 5.80e-47
integrase catalytic subunit similarity KEGG
DB: KEGG
  • Identity: 62.1
  • Coverage: 161.0
  • Bit_score: 194
  • Evalue 1.60e-47
Integrase catalytic region {ECO:0000313|EMBL:ABW12816.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.1
  • Coverage: 161.0
  • Bit_score: 194
  • Evalue 8.10e-47

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Frankia sp. EAN1pec → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 495
TTCGTCGTCGAGATCGCCACCCGCCGGGTCTGGCTGCTCGGGGTCACCGCCCATCCGGACGGGCCGTGGGTCACCCAGTGCGCCCGGAATCTCCTGATGGACCTGGGCGATCGAGGCGCCCGGTTCGGGTACCTGAGCCGGGACCGGGACAGCAAATTCACCGCCTCATTCGACGCGGTGTTCACCGCCGAGACCATCCGGATCGTGCGCACACCGATCCGAGCGCCCCGAGCGAACGCGCTCGCGGAGCGGTGGATCGGCAGCCTACGCCGGGAGCTGCTCGACCGGATCCTGATCGTCAACCGCCGCCAACTCGACCACGTCCTCGCCGTCTACGTCGATCACTACAACACCCACCGGCCGCACCGTTCCCTCGGCCAAACCCCACCTGGCCGCCGAACCACGCCGCCGCCGCCGGCCGATGACCTCGTTGTCCACCGACGCCAACGGCTTGGCGGTCTGATCCACGAGTACACGTATCCGCAGGTCGCATAG
PROTEIN sequence
Length: 165
FVVEIATRRVWLLGVTAHPDGPWVTQCARNLLMDLGDRGARFGYLSRDRDSKFTASFDAVFTAETIRIVRTPIRAPRANALAERWIGSLRRELLDRILIVNRRQLDHVLAVYVDHYNTHRPHRSLGQTPPGRRTTPPPPADDLVVHRRQRLGGLIHEYTYPQVA*