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PLM1_60_b1_redo_sep16_scaffold_10059

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_10059_1
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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3..497
DNA (495bp) protein (165aa)
Integrase catalytic region Tax=Frankia sp. (strain EAN1pec) RepID=A8KXN2_FRASN
integrase catalytic subunit
Integrase catalytic region {ECO:0000313|EMBL:ABW12816.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_10059_2
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(796..3033)
DNA (2238bp) protein (746aa)
hypothetical protein Tax=Amycolatopsis balhimycina RepID=UPI00036855A5
N-isopropylammelide isopropylaminohydrolase {ECO:0000313|EMBL:EFL07556.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
cytosine deaminase
PLM1_60_b1_redo_sep16_scaffold_10059_3
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(3229..3633)
DNA (405bp) protein (135aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI000379F1F2
cupin 2 domain-containing protein
Cupin 2 domain-containing protein {ECO:0000313|EMBL:AEK42269.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
PLM1_60_b1_redo_sep16_scaffold_10059_4
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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3809..5209
DNA (1401bp) protein (467aa)
Transposase Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RSH4_BLASD
transposase
Transposase {ECO:0000313|EMBL:CCG01725.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
PLM1_60_b1_redo_sep16_scaffold_10059_5
unknown

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6123..6548
DNA (426bp) protein (142aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_10059_6
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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6947..8602
DNA (1656bp) protein (552aa)
pyridine nucleotide-disulfide oxidoreductase Tax=Amycolatopsis methanolica RepID=UPI000368F7C5
trxB; response regulator/thioredoxin-disulfide reductase
Response regulator/thioredoxin-disulfide reductase {ECO:0000313|EMBL:AIJ23741.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM1_60_b1_redo_sep16_scaffold_10059_7
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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comp(8661..9203)
DNA (543bp) protein (181aa)
LuxR family transcriptional regulator bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
ATPase-like protein
Tax=CSP1_3_Armatimonadetes
PLM1_60_b1_redo_sep16_scaffold_10059_8
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9185..9604)
DNA (420bp) protein (140aa)
ATPase-like protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HGK1_ANADF
ATPase-like protein
ATPase-like protein {ECO:0000313|EMBL:ABS27847.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
PLM1_60_b1_redo_sep16_scaffold_10059_9
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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9995..10897
DNA (903bp) protein (301aa)
Short-chain dehydrogenase/reductase SDR Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X864_NAKMY
Short-chain dehydrogenase {ECO:0000313|EMBL:EWT01613.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
short-chain dehydrogenase/reductase SDR
PLM1_60_b1_redo_sep16_scaffold_10059_10
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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11534..12202
DNA (669bp) protein (223aa)
Integrase catalytic region Tax=Frankia sp. (strain EAN1pec) RepID=A8LH39_FRASN
integrase catalytic subunit
Integrase catalytic region {ECO:0000313|EMBL:ABW12810.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_10059_11
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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12514..14040
DNA (1527bp) protein (509aa)
amidase (EC:3.5.1.4)
Amidase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVB7_RUBXD
Amidase {ECO:0000313|EMBL:ABG04661.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM1_60_b1_redo_sep16_scaffold_10059_12
Rhodococcus jostii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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14136..14354
DNA (219bp) protein (73aa)
hypothetical protein Tax=Rhodococcus ruber RepID=UPI0003484C78
DNA integrase/recombinase
Possible DNA integrase/recombinase {ECO:0000313|EMBL:ABH00467.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus jostii (strain RHA1).;"
PLM1_60_b1_redo_sep16_scaffold_10059_13

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15104..15559
DNA (456bp) protein (152aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037A4780
Uncharacterized protein {ECO:0000313|EMBL:AIA10835.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_10059_14
unknown

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15806..16003
DNA (198bp) protein (66aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_10059_15
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(16273..16893)
DNA (621bp) protein (207aa)
Two-component system response regulator Tax=Actinoplanes sp. N902-109 RepID=R4LMM0_9ACTO
two-component system response regulator
Two-component system response regulator {ECO:0000313|EMBL:AGL18266.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
PLM1_60_b1_redo_sep16_scaffold_10059_16
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17006..17905)
DNA (900bp) protein (300aa)
Two-component system sensor kinase Tax=Actinoplanes sp. N902-109 RepID=R4LSM6_9ACTO
two-component system sensor kinase
Two-component system sensor kinase {ECO:0000313|EMBL:AGL18265.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
Displaying 16 items

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