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PLM1_60_b1_redo_sep16_scaffold_80

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_80_1
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..441)
DNA (441bp) protein (147aa)
NLP/P60 protein Tax=Frankia sp. (strain EAN1pec) RepID=A8L5H1_FRASN
NLP/P60 protein
NLP/P60 protein {ECO:0000313|EMBL:ABW11981.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_80_2
unknown

Not on your lists

comp(446..973)
DNA (528bp) protein (176aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_80_3
unknown

Not on your lists

comp(980..2221)
DNA (1242bp) protein (414aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_80_4
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2356..3366)
DNA (1011bp) protein (337aa)
Uncharacterized protein Tax=Acidovorax sp. (strain JS42) RepID=A1W9M0_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM42945.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
PLM1_60_b1_redo_sep16_scaffold_80_5
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(3403..4089)
DNA (687bp) protein (229aa)
signal peptidase I (EC:3.4.21.89)
Signal peptidase I Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B441_FRADG
Tax=RBG_16_Actinobacteria_70_17_curated
PLM1_60_b1_redo_sep16_scaffold_80_6
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(4405..5760)
DNA (1356bp) protein (452aa)
4-aminobutyrate aminotransferase; K07250 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase [EC:2.6.1.19 2.6.1.22] bin=bin9_gal15 species=Desulfovibrio longus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
4-aminobutyrate aminotransferase (EC:2.6.1.19)
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_80_7
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(5822..7066)
DNA (1245bp) protein (415aa)
saccharopine dehydrogenase bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
saccharopine dehydrogenase
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM1_60_b1_redo_sep16_scaffold_80_8
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

7319..8917
DNA (1599bp) protein (533aa)
Transcriptional regulator, PucR family Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FET8_CONWI
PucR family transcriptional regulator
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_80_9
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9127..10329
DNA (1203bp) protein (401aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
Spermidine/putrescine ABC transporter ATPase subunit Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1AAZ1_THECD
spermidine/putrescine ABC transporter ATPase
PLM1_60_b1_redo_sep16_scaffold_80_10
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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10313..11470
DNA (1158bp) protein (386aa)
Extracellular solute-binding protein, family 1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AS05_RUBXD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHI00644.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM1_60_b1_redo_sep16_scaffold_80_11
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

11517..12425
DNA (909bp) protein (303aa)
Binding-protein-dependent transport systems inner membrane component Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AS04_RUBXD
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABG05824.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM1_60_b1_redo_sep16_scaffold_80_12
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

12428..13318
DNA (891bp) protein (297aa)
Binding-protein-dependent transport systems inner membrane component Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AS03_RUBXD
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABG05825.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM1_60_b1_redo_sep16_scaffold_80_13
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13355..14785
DNA (1431bp) protein (477aa)
Aldehyde Dehydrogenase Tax=Micromonospora sp. (strain L5) RepID=E8S1Q1_MICSL
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR65229.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
aldehyde dehydrogenase
PLM1_60_b1_redo_sep16_scaffold_80_14
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14792..15493)
DNA (702bp) protein (234aa)
hypothetical protein Tax=Longispora albida RepID=UPI000375FE93
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EWC63611.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
TetR family transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_80_15
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15602..16921
DNA (1320bp) protein (440aa)
Acyl-CoA dehydrogenase domain-containing protein Tax=Mycobacterium tusciae JS617 RepID=H1K860_9MYCO
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EST20717.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.976.;"
acyl-CoA dehydrogenase
PLM1_60_b1_redo_sep16_scaffold_80_16
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(17103..17849)
DNA (747bp) protein (249aa)
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_80_17
marine actinobacterium MedAcidi-G1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17846..18568)
DNA (723bp) protein (241aa)
Uncharacterized protein {ECO:0000313|EMBL:KIE51780.1}; species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G1.;"
PLM1_60_b1_redo_sep16_scaffold_80_18
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(18565..19191)
DNA (627bp) protein (209aa)
Putative enzyme Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z1U6_9ACTN
putative iron-sulfur protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_80_19
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(19242..20156)
DNA (915bp) protein (305aa)
Putative menaquinol-cytochrome c reductase cytochrome b subunit Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZX02_9ACTN
putative menaquinol-cytochrome c reductase cytochrome b subunit
Putative menaquinol-cytochrome c reductase cytochrome b subunit {ECO:0000313|EMBL:BAN00716.1}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ilumatobacter.;" source="Ilumatobacter coccineus YM16-304.;"
PLM1_60_b1_redo_sep16_scaffold_80_20
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(20169..20951)
DNA (783bp) protein (261aa)
Menaquinol cytochrome C reductase Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z201_9ACTN
putative menaquinol-cytochrome c reductase cytochrome b subunit
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_80_21
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(21028..21381)
DNA (354bp) protein (118aa)
Uncharacterized protein Tax=Candidatus Microthrix parvicella RN1 RepID=R4Z5R8_9ACTN
putative 4Fe-4S ferredoxin
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_80_22
unknown

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comp(21394..21774)
DNA (381bp) protein (127aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_80_23
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22508..23275
DNA (768bp) protein (256aa)
Cytochrome c biogenesis protein transmembrane region Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A483_THECD
cytochrome c biogenesis protein transmembrane region
Cytochrome c biogenesis protein transmembrane region {ECO:0000313|EMBL:ACY99957.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_60_b1_redo_sep16_scaffold_80_24
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

23290..24924
DNA (1635bp) protein (545aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2NFB7_9ACTO
ResB family protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_80_25
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24958..25929
DNA (972bp) protein (324aa)
Cytochrome c-type biogenesis protein CcsB Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AVJ4_FRADG
cytochrome c-type biogenesis protein CcsB
Cytochrome c-type biogenesis protein CcsB {ECO:0000313|EMBL:AEH11305.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM1_60_b1_redo_sep16_scaffold_80_26
Intrasporangium oryzae, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25984..26823)
DNA (840bp) protein (280aa)
hypothetical protein Tax=Longispora albida RepID=UPI00036ECDFC
GDSL family lipase {ECO:0000313|EMBL:EWT00612.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_80_27
Mycobacterium aromaticivorans, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27037..27738
DNA (702bp) protein (234aa)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium aromaticivorans JS19b1 = JCM 16368.;"
ubiquinone/menaquinone biosynthesis methyltransferase Tax=Nocardioides sp. Iso805N RepID=UPI0003662396
ubiquinone/menaquinone biosynthesis methyltransferase
PLM1_60_b1_redo_sep16_scaffold_80_28
unknown

Not on your lists

comp(27826..28017)
DNA (192bp) protein (64aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_80_29
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28231..29463
DNA (1233bp) protein (411aa)
Geranylgeranyl reductase Tax=Frankia sp. (strain EAN1pec) RepID=A8LCA2_FRASN
geranylgeranyl reductase
Geranylgeranyl reductase {ECO:0000313|EMBL:ABW15439.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_80_30
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

29588..29950
DNA (363bp) protein (121aa)
NADH dehydrogenase subunit A Tax=Streptomyces sp. AA0539 RepID=UPI00030E013F
NAD(P)H-quinone oxidoreductase subunit 3
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Displaying items 1-30 of 68 in total

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