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PLM1_60_b1_redo_sep16_scaffold_82

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_82_1
unknown

Not on your lists

comp(3..83)
DNA (81bp) protein (27aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_82_2
unknown

Not on your lists

comp(116..934)
DNA (819bp) protein (273aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_82_3
BJP_IG2069_Chloroflexi_70_12, Chloroflexi, Bacteria

Not on your lists

comp(1240..2127)
DNA (888bp) protein (296aa)
Integrase family protein Tax=Frankia sp. (strain EuI1c) RepID=E3J6D8_FRASU
integrase family protein
Tax=BJP_IG2069_Chloroflexi_70_12
PLM1_60_b1_redo_sep16_scaffold_82_trna_2
unknown

Not on your lists

comp(2235..2308)
DNA (74bp)
transferRNA Ala
PLM1_60_b1_redo_sep16_scaffold_82_4
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

2689..3444
DNA (756bp) protein (252aa)
UPI0003D5E651 related cluster Tax=unknown RepID=UPI0003D5E651
oxidoreductase
Tax=RBG_16_Chloroflexi_57_11_curated
PLM1_60_b1_redo_sep16_scaffold_82_5
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

3531..4619
DNA (1089bp) protein (363aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|SAAS:SAAS00094456, ECO:0000313|EMBL:KIJ79112.1}; EC=2.4.99.17 {ECO:0000256|SAAS:SAAS00094434};; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
hypothetical protein Tax=Scytonema hofmanni RepID=UPI00034781A7
S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)
PLM1_60_b1_redo_sep16_scaffold_82_6
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5028..5885
DNA (858bp) protein (286aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
Ribosomal RNA small subunit methyltransferase I Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PQ37_KRIFD
uroporphyrin-III C/tetrapyrrole methyltransferase
PLM1_60_b1_redo_sep16_scaffold_82_7
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


6268..7851
DNA (1584bp) protein (528aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI000377313E
methionyl-tRNA synthetase
PLM1_60_b1_redo_sep16_scaffold_82_8
RBG_13_Chloroflexi_54_9_curated, Chloroflexi, Bacteria

Not on your lists

7854..8399
DNA (546bp) protein (182aa)
Putative uncharacterized protein bin=GWA2_Elusimicrobia_69_24 species=Thioalkalivibrio nitratireducens genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=RBG_13_Chloroflexi_54_9_curated
PLM1_60_b1_redo_sep16_scaffold_82_9
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

8728..10407
DNA (1680bp) protein (560aa)
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SEK5_GEOOG
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_82_10
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10453..11223
DNA (771bp) protein (257aa)
DNAase Tax=Amycolatopsis benzoatilytica RepID=UPI0003665079
TatD family hydrolase
Hydrolase, TatD family {ECO:0000313|EMBL:AEH08253.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM1_60_b1_redo_sep16_scaffold_82_11
Isoptericola variabilis, Isoptericola, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


11317..12438
DNA (1122bp) protein (374aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Isoptericola.;" source="Isoptericola variabilis (strain 225).;"
Ribosomal RNA small subunit methyltransferase A Tax=Isoptericola variabilis (strain 225) RepID=F6FSR2_ISOV2
ribosomal RNA small subunit methyltransferase A
PLM1_60_b1_redo_sep16_scaffold_82_12
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12562..13473
DNA (912bp) protein (304aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; Short=CMK {ECO:0000255|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000255|HAMAP-Rule:MF_00061};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase Tax=Aestuariimicrobium kwangyangense RepID=UPI0003B63476
PLM1_60_b1_redo_sep16_scaffold_82_trna_1
unknown

Not on your lists

13598..13669
DNA (72bp)
transferRNA Gln
PLM1_60_b1_redo_sep16_scaffold_82_13
Thermobifida fusca, Thermobifida, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13708..15135
DNA (1428bp) protein (476aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase (EC:2.3.1.157 2.7.7.23)
Bifunctional protein GlmU {ECO:0000255|HAMAP-Rule:MF_01631}; Includes:; UDP-N-acetylglucosamine pyrophosphorylase {ECO:0000255|HAMAP-Rule:MF_01631}; EC=2.7.7.23 {ECO:0000255|HAMAP-Rule:MF_01631};; N-acetylglucosamine-1-phosphate uridyltransferase {ECO:0000255|HAMAP-Rule:MF_01631}; Includes:; Glucosamine-1-phosphate N-acetyltransferase {ECO:0000255|HAMAP-Rule:MF_01631}; EC=2.3.1.157 {ECO:0000255|HAMAP-Rule:MF_01631};; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Thermobifida.;" source="Thermobifida fusca (strain YX).;"
hypothetical protein Tax=Nocardiopsis chromatogenes RepID=UPI000347767D
PLM1_60_b1_redo_sep16_scaffold_82_14
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15162..16163
DNA (1002bp) protein (334aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
Ribose-phosphate pyrophosphokinase Tax=Frankia sp. CN3 RepID=G6HLW4_9ACTO
PLM1_60_b1_redo_sep16_scaffold_82_15
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16233..16400
DNA (168bp) protein (56aa)
Intracellular protease, PfpI family Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9T7K8_MICAI
intracellular protease, pfpi family
Intracellular protease, PfpI family {ECO:0000313|EMBL:EWM66353.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
PLM1_60_b1_redo_sep16_scaffold_82_16
Arthrobacter crystallopoietes, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16381..16806
DNA (426bp) protein (142aa)
Uncharacterized protein Tax=Arthrobacter crystallopoietes BAB-32 RepID=N1V8B5_9MICC
Uncharacterized protein {ECO:0000313|EMBL:EMY34498.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter crystallopoietes BAB-32.;"
putative signal transduction protein with CBS domains
PLM1_60_b1_redo_sep16_scaffold_82_17
Chroococcidiopsis thermalis, Chroococcidiopsis, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

17028..17546
DNA (519bp) protein (173aa)
hypothetical protein Tax=cyanobacterium PCC 7702 RepID=UPI00036FADC8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY90616.1}; species="Bacteria; Cyanobacteria; Pleurocapsales; Chroococcidiopsis.;" source="Chroococcidiopsis thermalis PCC 7203.;"
PLM1_60_b1_redo_sep16_scaffold_82_18

Not on your lists

17565..18074
DNA (510bp) protein (170aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2DLT8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKN22535.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
type 11 methyltransferase
PLM1_60_b1_redo_sep16_scaffold_82_19
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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18388..19446
DNA (1059bp) protein (353aa)
ATP-dependent DNA ligase {ECO:0000313|EMBL:ETK32452.1}; EC=6.5.1.1 {ECO:0000313|EMBL:ETK32452.1};; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
ATP-dependent DNA ligase (EC:6.5.1.1)
ATP-dependent DNA ligase Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RR49_BLASD
PLM1_60_b1_redo_sep16_scaffold_82_20
unknown

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19710..20096
DNA (387bp) protein (129aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_82_21
unknown

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comp(20257..20598)
DNA (342bp) protein (114aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_82_22
unknown

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comp(20591..20773)
DNA (183bp) protein (61aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_82_23
Mycobacterium vanbaalenii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20767..21312)
DNA (546bp) protein (182aa)
Amino acid/polyamine/organocation transporter, APC superfamily Tax=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) RepID=A1TC05_MYCVP
amino acid permease-associated protein
Amino acid/polyamine/organocation transporter, APC superfamily {ECO:0000313|EMBL:ABM14705.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1).;"
PLM1_60_b1_redo_sep16_scaffold_82_24
Frankia sp. CcI3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21519..23057
DNA (1539bp) protein (513aa)
Transcriptional regulator, XRE family Tax=Frankia sp. (strain CcI3) RepID=Q2JD86_FRASC
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABD10756.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;"
PLM1_60_b1_redo_sep16_scaffold_82_25
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

23120..25003
DNA (1884bp) protein (628aa)
Peptidase S9 prolyl oligopeptidase active site domain protein Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3H5_SPHTD
peptidase S9 prolyl oligopeptidase active site domain-containing protein
Peptidase S9 prolyl oligopeptidase active site domain protein {ECO:0000313|EMBL:ACZ38792.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM1_60_b1_redo_sep16_scaffold_82_26
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25253..26203)
DNA (951bp) protein (317aa)
hypothetical protein Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002626E31
TM helix repeat-containing protein {ECO:0000313|EMBL:CDO24864.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
TM helix repeat-containing protein
PLM1_60_b1_redo_sep16_scaffold_82_27
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


26655..27296
DNA (642bp) protein (214aa)
50S ribosomal protein L25 Tax=Frankia sp. CN3 RepID=G6HQ21_9ACTO
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
PLM1_60_b1_redo_sep16_scaffold_82_28
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27344..27955
DNA (612bp) protein (204aa)
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000255|HAMAP-Rule:MF_00083}; Short=PTH {ECO:0000255|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000255|HAMAP-Rule:MF_00083};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
Peptidyl-tRNA hydrolase Tax=Frankia alni (strain ACN14a) RepID=PTH_FRAAA
Displaying items 1-30 of 61 in total

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