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PLM1_60_b1_redo_sep16_scaffold_217

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_217_1
unknown

Not on your lists

comp(1..81)
DNA (81bp) protein (27aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_217_2
unknown

Not on your lists

comp(259..441)
DNA (183bp) protein (61aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_217_3
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(435..1961)
DNA (1527bp) protein (509aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI00037141C2
Amino acid permease-associated protein {ECO:0000313|EMBL:KGE67186.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
amino acid permease-associated protein
PLM1_60_b1_redo_sep16_scaffold_217_4
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2077..2910)
DNA (834bp) protein (278aa)
Histidinol-phosphate phosphatase Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AXB2_FRADG
hypothetical protein
Myo-inositol-1(Or 4)-monophosphatase {ECO:0000313|EMBL:EWM15819.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
PLM1_60_b1_redo_sep16_scaffold_217_5
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2907..4043)
DNA (1137bp) protein (379aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mobaraensis NBRC 13819 = DSM 40847.;"
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3BAJ0_STRMB
PLM1_60_b1_redo_sep16_scaffold_217_6
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4365..5768
DNA (1404bp) protein (468aa)
hypothetical protein Tax=Salinispora arenicola RepID=UPI0003754C82
Helix-turn-helix protein {ECO:0000313|EMBL:KJE20110.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_217_7
Streptomyces sp. Mg1, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5756..6259
DNA (504bp) protein (168aa)
hypothetical protein Tax=Salinispora arenicola RepID=UPI000378DA7A
Putative uncharacterized protein {ECO:0000313|EMBL:EDX23625.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Mg1.;"
acetyltransferase
PLM1_60_b1_redo_sep16_scaffold_217_8
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6500..7195
DNA (696bp) protein (232aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI000376FAC0
CRISPR-associated protein Cas6 {ECO:0000313|EMBL:EFC81103.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
CRISPR-associated protein Cas6
PLM1_60_b1_redo_sep16_scaffold_217_9
Streptomyces sp. 769, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7303..8640
DNA (1338bp) protein (446aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI00035C612C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJC55113.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 769.;"
PLM1_60_b1_redo_sep16_scaffold_217_10
Streptomyces rubellomurinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8637..9683
DNA (1047bp) protein (349aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI000366BF7A
CRISPR-associated protein DevR {ECO:0000313|EMBL:KJS63832.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rubellomurinus.;"
CRISPR-associated autoregulator C DevR family
PLM1_60_b1_redo_sep16_scaffold_217_11
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9680..10393
DNA (714bp) protein (238aa)
Metal dependent phosphohydrolase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A6P6_THECD
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ACY96521.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
Maybe Cas5 Adi Lavy (8/24/18)
PLM1_60_b1_redo_sep16_scaffold_217_12
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10390..12792
DNA (2403bp) protein (801aa)
Metal dependent phosphohydrolase Tax=Frankia sp. EUN1f RepID=D3D7J6_9ACTO
Metal dependent phosphohydrolase {ECO:0000313|EMBL:EFC81107.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
CRISPR-associated helicase Cas3
PLM1_60_b1_redo_sep16_scaffold_217_13
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12789..13319
DNA (531bp) protein (177aa)
Putative uncharacterized protein Tax=Frankia sp. (strain EAN1pec) RepID=A8L915_FRASN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW10838.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
maybe Cas4 Adi Lavy (8/24/18)
PLM1_60_b1_redo_sep16_scaffold_217_14
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13322..14305
DNA (984bp) protein (328aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
CRISPR-associated endonuclease Cas1 Tax=Frankia sp. QA3 RepID=I9KP59_9ACTO
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_217_15
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14309..14569
DNA (261bp) protein (87aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440).;"
CRISPR-associated endoribonuclease Cas2 Tax=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) RepID=A4X3M3_SALTO
CRISPR-associated Cas2 family protein
PLM1_60_b1_redo_sep16_scaffold_217_16
Streptomyces pristinaespiralis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15648..16265)
DNA (618bp) protein (206aa)
Transcriptional regulator Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5H8V7_STRPR
Transcriptional regulator {ECO:0000313|EMBL:EDY63268.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pristinaespiralis ATCC 25486.;"
TetR family transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_217_17
Streptomyces sp. PCS3-D2, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16390..17931
DNA (1542bp) protein (514aa)
MFS transporter Tax=Streptomyces sp. R1-NS-10 RepID=UPI0003666A25
MFS transporter {ECO:0000313|EMBL:EYU65686.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. PCS3-D2.;"
MFS transporter
PLM1_60_b1_redo_sep16_scaffold_217_18
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17970..19049)
DNA (1080bp) protein (360aa)
Putative uncharacterized protein Tax=Micromonospora sp. ATCC 39149 RepID=C4REZ8_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EEP70177.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_217_19
Paenibacillus barengoltzii, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19261..19788
DNA (528bp) protein (176aa)
PfpI family intracellular protease Tax=Paenibacillus barengoltzii G22 RepID=R9LHC6_9BACL
PfpI family intracellular protease {ECO:0000313|EMBL:EOS57968.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus barengoltzii G22.;"
glutamine amidotransferase
PLM1_60_b1_redo_sep16_scaffold_217_20
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19743..20699)
DNA (957bp) protein (319aa)
Patatin Tax=Thermincola potens (strain JR) RepID=D5X9C5_THEPJ
patatin
Patatin {ECO:0000313|EMBL:ADG83029.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
PLM1_60_b1_redo_sep16_scaffold_217_21
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

20901..21902
DNA (1002bp) protein (334aa)
Putative uncharacterized protein Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZL1_RUBXD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG03167.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM1_60_b1_redo_sep16_scaffold_217_22
Mycobacterium llatzerense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21775..22329)
DNA (555bp) protein (185aa)
hypothetical protein Tax=Streptomyces sp. CcalMP-8W RepID=UPI00037AF435
Mycobacterium llatzerense strain CLUC14 Mllat_contig000050, whole genome shotgun sequence {ECO:0000313|EMBL:KIU14195.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium llatzerense.;"
putative sugar acetyltransferase
PLM1_60_b1_redo_sep16_scaffold_217_23
Oceanithermus profundus, Oceanithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(22482..23804)
DNA (1323bp) protein (441aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; Flags: Precursor;; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Oceanithermus.;" source="Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 /; 506).;"
3-phosphoshikimate 1-carboxyvinyltransferase Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U9Q2_OCEP5
3-phosphoshikimate 1-carboxyvinyltransferase
PLM1_60_b1_redo_sep16_scaffold_217_24
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(23901..24527)
DNA (627bp) protein (209aa)
3-isopropylmalate dehydratase small subunit bin=GWC2_Chloroflexi_73_18 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
leuD; isopropylmalate isomerase small subunit
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM1_60_b1_redo_sep16_scaffold_217_25
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(24524..26056)
DNA (1533bp) protein (511aa)
isopropylmalate isomerase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit bin=GWC2_Chloroflexi_73_18 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=CSP1_4_Chloroflexi
PLM1_60_b1_redo_sep16_scaffold_217_26
Streptomyces clavuligerus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26250..26831
DNA (582bp) protein (194aa)
hypothetical protein Tax=Streptomyces clavuligerus RepID=UPI00020D90CA
Putative uncharacterized protein {ECO:0000313|EMBL:EFG07447.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 /; NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602).;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_217_27
unknown

Not on your lists

26915..27379
DNA (465bp) protein (155aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_217_28
Thermus thermophilus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(27504..27944)
DNA (441bp) protein (147aa)
UPI0000E6B07B related cluster Tax=unknown RepID=UPI0000E6B07B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFH39555.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus thermophilus JL-18.;"
PLM1_60_b1_redo_sep16_scaffold_217_29
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28109..29329
DNA (1221bp) protein (407aa)
Arginine deiminase {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997}; Short=ADI {ECO:0000256|HAMAP-Rule:MF_00242};; EC=3.5.3.6 {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997};; Arginine dihydrolase {ECO:0000256|HAMAP-Rule:MF_00242}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
arcA; arginine deiminase (EC:3.5.3.6)
arginine deiminase Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI000262792F
PLM1_60_b1_redo_sep16_scaffold_217_30
RBG_16_Actinobacteria_67_15_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(29456..30343)
DNA (888bp) protein (296aa)
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
hypothetical protein Tax=Dehalobacter sp. FTH1 RepID=UPI00036D2933
Tax=RBG_16_Actinobacteria_67_15_curated
Displaying items 1-30 of 46 in total

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