ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_268

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_268_1
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(25..975)
DNA (951bp) protein (317aa)
hypothetical protein Tax=Frankia sp. BCU110501 RepID=UPI000369469D
Transposase IS66 family protein {ECO:0000313|EMBL:KJE77319.1}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Ferrimicrobium acidiphilum DSM 19497.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_268_2
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1419..2168)
DNA (750bp) protein (250aa)
hypothetical protein Tax=Streptomyces purpureus RepID=UPI0003675918
Uncharacterized protein {ECO:0000313|EMBL:KFF96127.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabiei.;"
PLM1_60_b1_redo_sep16_scaffold_268_3
BJP_IG2158_Thermincola_46_17, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2327..3976
DNA (1650bp) protein (550aa)
Cytosine-specific methyltransferase Tax=Xanthomonas axonopodis pv. punicae str. LMG 859 RepID=H1XMQ9_9XANT
putative DNA (cytosine-5-)-methyltransferase
Tax=BJP_IG2158_Thermincola_46_17
PLM1_60_b1_redo_sep16_scaffold_268_4
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4508..6271)
DNA (1764bp) protein (588aa)
UPI0003CF68DE related cluster Tax=unknown RepID=UPI0003CF68DE
Uncharacterized protein {ECO:0000313|EMBL:ESY91595.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
Helicase domain protein
PLM1_60_b1_redo_sep16_scaffold_268_5
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6268..7773)
DNA (1506bp) protein (502aa)
UPI0003D00406 related cluster Tax=unknown RepID=UPI0003D00406
Uncharacterized protein {ECO:0000313|EMBL:ESY91594.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
PLM1_60_b1_redo_sep16_scaffold_268_6
unknown

Not on your lists

comp(7776..8516)
DNA (741bp) protein (247aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_268_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8994..9743)
DNA (750bp) protein (250aa)
Succinate dehydrogenase and fumarate reductase iron-sulfur protein Tax=Frankia sp. CN3 RepID=G6HMX3_9ACTO
fumarate reductase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_60_b1_redo_sep16_scaffold_268_8
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(9745..11541)
DNA (1797bp) protein (599aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] bin=bin3_NC10 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1)
Tax=CSP1_5_NC10
PLM1_60_b1_redo_sep16_scaffold_268_9
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(11544..12326)
DNA (783bp) protein (261aa)
integral membrane protein bin=bin3_NC10 species=Streptomyces sp. BoleA5 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM1_60_b1_redo_sep16_scaffold_268_10
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12487..13029)
DNA (543bp) protein (181aa)
Uncharacterized protein Tax=Modestobacter marinus (strain BC501) RepID=I4EWY6_MODMB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH87899.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
PLM1_60_b1_redo_sep16_scaffold_268_11
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13122..14951)
DNA (1830bp) protein (610aa)
Uncharacterized protein Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AY43_FRADG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH08547.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM1_60_b1_redo_sep16_scaffold_268_12
unknown

Not on your lists

15129..15281
DNA (153bp) protein (51aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_268_13
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15278..15847)
DNA (570bp) protein (190aa)
Uncharacterized protein Tax=Leifsonia aquatica ATCC 14665 RepID=U2RTE2_LEIAQ
Uncharacterized protein {ECO:0000313|EMBL:ERK72046.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_268_14
unknown

Not on your lists

16450..16812
DNA (363bp) protein (121aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_268_15
unknown

Not on your lists

16809..17297
DNA (489bp) protein (163aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_268_16
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17439..18590
DNA (1152bp) protein (384aa)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI000379C68F
glycosyltransferase
Glycosyltransferase {ECO:0000313|EMBL:CCG01287.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
PLM1_60_b1_redo_sep16_scaffold_268_17
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18650..19795)
DNA (1146bp) protein (382aa)
Alcohol dehydrogenase zinc-binding domain protein Tax=Micromonospora RepID=D9TA96_MICAI
alcohol dehydrogenase zinc-binding domain-containing protein
Alcohol dehydrogenase zinc-binding domain protein {ECO:0000313|EMBL:ADL46409.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_268_18
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19788..20750)
DNA (963bp) protein (321aa)
hypothetical protein Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000378AB6B
Glycosyl transferase group 1 {ECO:0000313|EMBL:EUB98321.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
group 1 glycosyl transferase
PLM1_60_b1_redo_sep16_scaffold_268_19
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21105..22418
DNA (1314bp) protein (438aa)
Metallophosphoesterase Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KBF9_NITWC
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:ADJ29606.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus watsoni (strain C-113).;"
PLM1_60_b1_redo_sep16_scaffold_268_20
RHI_WWE3_38_15, WWE3, Bacteria

Not on your lists

22602..23705
DNA (1104bp) protein (368aa)
Secreted protein Tax=Streptomyces roseosporus NRRL 15998 RepID=D6ADY7_STRFL bin=ACD24 species=Streptomyces filamentosus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=ACD24 organism_group=WWE3 organism_desc=WWE3
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_WWE3_38_15_curated
PLM1_60_b1_redo_sep16_scaffold_268_21
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(24272..25519)
DNA (1248bp) protein (416aa)
hypothetical protein Tax=Meiothermus timidus RepID=UPI00035F130E
hypothetical protein
Tax=RBG_16_Chloroflexi_52_11_curated
PLM1_60_b1_redo_sep16_scaffold_268_22
Streptomyces niveus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25780..26247
DNA (468bp) protein (156aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces niveus NCIMB 11891.;"
CMP deaminase Tax=Streptomyces niveus NCIMB 11891 RepID=V6K168_STRNV
tRNA-adenosine deaminase
PLM1_60_b1_redo_sep16_scaffold_268_trna_1
unknown

Not on your lists

26289..26375
DNA (87bp)
transferRNA Ser
PLM1_60_b1_redo_sep16_scaffold_268_23
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(26589..27206)
DNA (618bp) protein (206aa)
pyridoxamine 5''''-phosphate oxidase Tax=Methylovulum miyakonense RepID=UPI00035FB99C
pyridoxamine 5-phosphate oxidase-related FMN-binding protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM1_60_b1_redo_sep16_scaffold_268_24
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(27451..28197)
DNA (747bp) protein (249aa)
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI00037A2A2A
Uncharacterized protein {ECO:0000313|EMBL:EFH79858.1}; Flags: Precursor;; species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
putative secreted protein
PLM1_60_b1_redo_sep16_scaffold_268_25
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28509..29027)
DNA (519bp) protein (173aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00036E1683
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN99248.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
PLM1_60_b1_redo_sep16_scaffold_268_26
Amycolatopsis decaplanina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29024..29395)
DNA (372bp) protein (124aa)
ArsR family transcriptional regulator Tax=Actinopolymorpha alba RepID=UPI00037F1438
ArsR family transcriptional regulator {ECO:0000313|EMBL:EME50824.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis decaplanina DSM 44594.;"
putative ArsR-family transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_268_trna_2
unknown

Not on your lists

29768..29854
DNA (87bp)
transferRNA Ser
PLM1_60_b1_redo_sep16_scaffold_268_27
RBG_16_Actinobacteria_68_21_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(29890..31461)
DNA (1572bp) protein (524aa)
Drug resistance transporter, EmrB/QacA subfamily Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FEZ2_CONWI
EmrB/QacA subfamily drug resistance transporter
Tax=RBG_16_Actinobacteria_68_21_curated
PLM1_60_b1_redo_sep16_scaffold_268_28
Streptomyces olindensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31458..31973)
DNA (516bp) protein (172aa)
Putative MarR-family transcriptional regulator Tax=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) RepID=Q82MQ2_STRAW
MarR family transcriptional regulator {ECO:0000313|EMBL:KDN79745.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces olindensis.;"
MarR family transcriptional regulator
Displaying items 1-30 of 38 in total

View Taxonomy