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PLM1_60_b1_redo_sep16_scaffold_487

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_487_1
Arthrobacter chlorophenolicus, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..485
DNA (483bp) protein (161aa)
gamma-glutamyltransferase (EC:2.3.2.2)
Gamma-glutamyltransferase {ECO:0000313|EMBL:ACL41714.1}; EC=2.3.2.2 {ECO:0000313|EMBL:ACL41714.1};; Flags: Precursor;; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter chlorophenolicus (strain ATCC 700700 / DSM 12829 / JCM; 12360 / NCIMB 13794 / A6).;"
gamma-glutamyltransferase Tax=Arthrobacter sp. 162MFSha1.1 RepID=UPI00037BB6A9
PLM1_60_b1_redo_sep16_scaffold_487_2
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

1174..2181
DNA (1008bp) protein (336aa)
hypothetical protein bin=bin9_gal15 species=Smaragdicoccus niigatensis genus=Smaragdicoccus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
Tax=CSP1_3_Armatimonadetes
PLM1_60_b1_redo_sep16_scaffold_487_3
Streptomyces katrae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2502..3110
DNA (609bp) protein (203aa)
VldV Tax=Streptomyces viridosporus RepID=UPI0001AF07FB
VldV {ECO:0000313|EMBL:KJY26691.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces katrae.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_487_4
Streptomyces hygroscopicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3107..3865
DNA (759bp) protein (253aa)
Probable membrane protein Tax=Streptomyces hygroscopicus subsp. limoneus RepID=Q15JG9_STRHY
Probable membrane protein {ECO:0000313|EMBL:ABC67261.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces hygroscopicus subsp. limoneus.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_487_5
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4114..5058)
DNA (945bp) protein (315aa)
alpha/beta hydrolase Tax=Rhodococcus sp. P14 RepID=UPI00029AB65C
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:CDZ88498.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus ruber.;"
alpha/beta superfamily hydrolase
PLM1_60_b1_redo_sep16_scaffold_487_6
unknown

Not on your lists

5344..5595
DNA (252bp) protein (84aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_487_7
unknown

Not on your lists

comp(6540..6830)
DNA (291bp) protein (97aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_487_8
unknown

Not on your lists

6895..7407
DNA (513bp) protein (171aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_487_trna_1
unknown

Not on your lists

7532..7604
DNA (73bp)
transferRNA Thr
PLM1_60_b1_redo_sep16_scaffold_487_9
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7685..7930)
DNA (246bp) protein (82aa)
hypothetical protein Tax=Salinispora arenicola RepID=UPI00037C3E37
Helix-turn-helix domain {ECO:0000313|EMBL:KJE23686.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
regulatory protein MerR
PLM1_60_b1_redo_sep16_scaffold_487_10
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8159..9790)
DNA (1632bp) protein (544aa)
Response regulator receiver protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HGK2_ANADF
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ABS27848.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
PLM1_60_b1_redo_sep16_scaffold_487_11
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9911..10123)
DNA (213bp) protein (71aa)
Predicted protein Tax=Streptomyces sp. AA4 RepID=D9VCZ0_9ACTO
Predicted protein {ECO:0000313|EMBL:EFL05675.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
putative secreted protein
PLM1_60_b1_redo_sep16_scaffold_487_trna_2
unknown

Not on your lists

comp(10164..10237)
DNA (74bp)
transferRNA Arg
PLM1_60_b1_redo_sep16_scaffold_487_12
Paenibacillus alvei, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10210..10593
DNA (384bp) protein (128aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI000364693A
DNA-directed RNA polymerase subunit sigma {ECO:0000313|EMBL:EPY03809.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus alvei TS-15.;"
ECF subfamily RNA polymerase sigma-24 factor
PLM1_60_b1_redo_sep16_scaffold_487_13
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(10803..11210)
DNA (408bp) protein (136aa)
Putative polyketide cyclase/dehydrase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IHR1_NITGG
polyketide cyclase/dehydrase
Putative polyketide cyclase/dehydrase {ECO:0000313|EMBL:AFU59475.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM1_60_b1_redo_sep16_scaffold_487_14
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11235..11462
DNA (228bp) protein (76aa)
Uncharacterized protein Tax=Rhodococcus wratislaviensis IFP 2016 RepID=L2THY5_9NOCA
ArsR family transcriptional regulator {ECO:0000313|EMBL:AII06973.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (Nocardia opaca).;"
Putative regulatory protein (possibly ArsR-family)
PLM1_60_b1_redo_sep16_scaffold_487_15

Not on your lists

11497..12204
DNA (708bp) protein (236aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2MML8_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KKK96126.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_487_16
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12450..12788)
DNA (339bp) protein (113aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2ARY6_STRRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ84665.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM1_60_b1_redo_sep16_scaffold_487_17
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13541..14731
DNA (1191bp) protein (397aa)
Uncharacterized protein Tax=Frankia sp. (strain EuI1c) RepID=E3IWB1_FRASU
Uncharacterized protein {ECO:0000313|EMBL:KJE21185.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_487_18
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14728..15390)
DNA (663bp) protein (221aa)
Putative uncharacterized protein Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9T7V4_MICAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL46079.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_487_19
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15763..16065
DNA (303bp) protein (101aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI00037141C2
Amino acid permease-associated protein {ECO:0000313|EMBL:KGE67186.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens LMG 5329.;"
amino acid permease-associated protein
PLM1_60_b1_redo_sep16_scaffold_487_20
Kitasatospora setae, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16059..16760
DNA (702bp) protein (234aa)
Uncharacterized protein Tax=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) RepID=E4NAF0_KITSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAJ28181.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC; A-0304 / NBRC 14216 / KM-6054) (Streptomyces setae).;"
PLM1_60_b1_redo_sep16_scaffold_487_21
unknown

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16757..16900
DNA (144bp) protein (48aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_487_22
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17180..18787)
DNA (1608bp) protein (536aa)
hypothetical protein Tax=Streptomyces sulphureus RepID=UPI0002DCCE1E
Protein kinase {ECO:0000313|EMBL:KIF69551.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
protein kinase
PLM1_60_b1_redo_sep16_scaffold_487_23
Actinopolyspora erythraea, Actinopolyspora, Actinopolysporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18833..22009)
DNA (3177bp) protein (1059aa)
hypothetical protein Tax=Streptomyces RepID=UPI00036F84A3
Restriction endonuclease subunit R {ECO:0000313|EMBL:KGI81283.1}; species="Bacteria; Actinobacteria; Actinopolysporales; Actinopolysporaceae; Actinopolyspora.;" source="Actinopolyspora erythraea.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_487_24
Nocardiopsis dassonvillei, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22025..22318)
DNA (294bp) protein (98aa)
SMC domain protein Tax=Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 / JCM 7437 / NCTC 10488) RepID=D7AVP4_NOCDD
SMC domain-containing protein
SMC domain protein {ECO:0000313|EMBL:ADH67733.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 /; JCM 7437 / NCTC 10488) (Actinomadura dassonvillei).;"
PLM1_60_b1_redo_sep16_scaffold_487_25
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22279..23241)
DNA (963bp) protein (321aa)
SMC domain protein Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SGZ0_THEM7
SMC domain-containing protein
Tax=RBG_16_Deltaproteobacteria_71_12_curated
PLM1_60_b1_redo_sep16_scaffold_487_26
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23241..24518)
DNA (1278bp) protein (426aa)
Restriction modification system DNA specificity domain protein Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WNJ9_ACTMD
restriction modification system DNA specificity domain-containing protein
Restriction modification system DNA specificity domain protein {ECO:0000313|EMBL:ACU34918.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU; 3971).;"
PLM1_60_b1_redo_sep16_scaffold_487_27
Streptomyces bottropensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24515..26518)
DNA (2004bp) protein (668aa)
hypothetical protein Tax=Streptomyces RepID=UPI0003755289
Type I restriction-modification system methyltransferase subunit {ECO:0000313|EMBL:EMF50889.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bottropensis ATCC 25435.;"
N-6 DNA Methylase family protein
PLM1_60_b1_redo_sep16_scaffold_487_28
Streptomyces coelicoflavus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26520..27554)
DNA (1035bp) protein (345aa)
Type II restriction-modification system DNA adenine-specific methylase (Fragment) Tax=Streptomyces coelicoflavus ZG0656 RepID=H1QRZ7_9ACTO
Type II restriction-modification system DNA adenine-specific methylase {ECO:0000313|EMBL:EHN72799.1}; Flags: Fragment;; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces coelicoflavus ZG0656.;"
hypothetical protein
Displaying items 1-30 of 36 in total

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