ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_782

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_782_1
unknown

Not on your lists

2..787
DNA (786bp) protein (262aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_782_2
Amycolatopsis japonica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

983..1999
DNA (1017bp) protein (339aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI0003799776
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIG77358.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis japonica.;"
PLM1_60_b1_redo_sep16_scaffold_782_3
Amycolatopsis japonica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1996..5298
DNA (3303bp) protein (1101aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI00035D0BB0
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIG77357.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis japonica.;"
PLM1_60_b1_redo_sep16_scaffold_782_4
Streptomyces sp. 769, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5295..8033
DNA (2739bp) protein (913aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI0003769969
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJC62086.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. 769.;"
PLM1_60_b1_redo_sep16_scaffold_782_5

Not on your lists

comp(8269..9510)
DNA (1242bp) protein (414aa)
Transposition helper protein Tax=mine drainage metagenome RepID=T1ABM8_9ZZZZ
DNA recombinase {ECO:0000313|EMBL:EQD51568.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
IstB domain protein ATP-binding protein
PLM1_60_b1_redo_sep16_scaffold_782_6

Not on your lists

comp(9507..9668)
DNA (162bp) protein (54aa)
Transposase IstA protein (Fragment) Tax=mine drainage metagenome RepID=T1AWC4_9ZZZZ
Transposase IstA protein {ECO:0000313|EMBL:EQD61762.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PLM1_60_b1_redo_sep16_scaffold_782_7
Mycobacterium kansasii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10084..10824)
DNA (741bp) protein (247aa)
Transposase IstA Tax=Mycobacterium kansasii ATCC 12478 RepID=U5WXF3_MYCKA
Putative transposase {ECO:0000313|EMBL:EUA13034.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium kansasii 732.;"
transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_782_8
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11230..12246)
DNA (1017bp) protein (339aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum JCM 14848.;"
Alpha amylase Tax=Halosarcina pallida JCM 14848 RepID=M0D579_9EURY
PLM1_60_b1_redo_sep16_scaffold_782_9
Streptomyces clavuligerus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12910..14127)
DNA (1218bp) protein (406aa)
Rhodopirellula transposase Tax=Streptomyces clavuligerus RepID=E2Q9S5_STRC2
Rhodopirellula transposase {ECO:0000313|EMBL:EFG07652.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 /; NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602).;"
transposase
PLM1_60_b1_redo_sep16_scaffold_782_10
unknown

Not on your lists

comp(14416..14691)
DNA (276bp) protein (92aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_782_11
unknown

Not on your lists

comp(14693..15004)
DNA (312bp) protein (104aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_782_12
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15573..15866
DNA (294bp) protein (98aa)
UPF0235 protein Sthe_1691 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4F8_SPHTD
hypothetical protein
Tax=CG_Rhodocyc_01
PLM1_60_b1_redo_sep16_scaffold_782_13
unknown

Not on your lists

comp(16260..16664)
DNA (405bp) protein (135aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_782_14
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16884..17108
DNA (225bp) protein (75aa)
Integrase catalytic region Tax=Frankia sp. (strain EAN1pec) RepID=A8L925_FRASN
integrase catalytic subunit
Integrase catalytic region {ECO:0000313|EMBL:ABW10848.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_782_15
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

17105..17974
DNA (870bp) protein (290aa)
Integrase catalytic region Tax=Frankia sp. CN3 RepID=G6HF82_9ACTO
integrase catalytic subunit
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_782_16
unknown

Not on your lists

18176..18553
DNA (378bp) protein (126aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_782_17
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18695..19138)
DNA (444bp) protein (148aa)
Integrase catalytic region Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F2L772_PSEUX
Integrase catalytic region
Integrase catalytic region {ECO:0000313|EMBL:AEA29045.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM1_60_b1_redo_sep16_scaffold_782_18
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19179..21395)
DNA (2217bp) protein (739aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2PIH9_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KII00075.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
AfsR-like transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_782_19
unknown

Not on your lists

comp(21411..21800)
DNA (390bp) protein (130aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_782_20
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(22774..23688)
DNA (915bp) protein (305aa)
carbamate kinase (EC:2.7.2.2)
hypothetical protein Tax=Nocardioides sp. Iso805N RepID=UPI00036F5738
Tax=RBG_16_Chloroflexi_52_11_curated
Displaying 20 items

View Taxonomy