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PLM4_90_b2_sep16_scaffold_1363

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b2_sep16_scaffold_1363_1
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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2..1375
DNA (1374bp) protein (458aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI0002ED403E
class II aminotransferase
Class II aminotransferase {ECO:0000313|EMBL:AEI66006.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
PLM4_90_b2_sep16_scaffold_1363_2
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1601..1807)
DNA (207bp) protein (69aa)
Putative uncharacterized protein bin=GWB2_Desulfobacterales_56_26 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_1363_3
unknown

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2344..2793
DNA (450bp) protein (150aa)

This feature has no annotations

PLM4_90_b2_sep16_scaffold_1363_4
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

3008..3205
DNA (198bp) protein (66aa)
antitoxin Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B5F88D
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PLM4_90_b2_sep16_scaffold_1363_5
GWB2_Planctomycetes_41_19_curated, Brocadiales, Planctomycetes, Bacteria

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3207..3563
DNA (357bp) protein (119aa)
twitching motility protein PilT Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B3A9A2
PilT protein domain-containing protein
Tax=GWB2_Planctomycetes_41_19_curated
PLM4_90_b2_sep16_scaffold_1363_6
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4104..4937
DNA (834bp) protein (278aa)
Phosphoglycerate mutase family protein Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A4E7_PELCD
cofactor-independent phosphoglycerate mutase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_7
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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4934..5320
DNA (387bp) protein (129aa)
CTP synthase (EC:6.3.4.2)
CTP synthase Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CEX1_DESTA
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_8
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5317..6570
DNA (1254bp) protein (418aa)
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthetase Tax=Thermodesulfobacterium thermophilum RepID=UPI0003B5FD6F
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_9
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6567..6851
DNA (285bp) protein (95aa)
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55); K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55)
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_10
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6848..7351
DNA (504bp) protein (168aa)
2-dehydro-3-deoxyphosphooctonate aldolase bin=GWA2_OP3_53_43 species=Phascolarctobacterium succinatutens genus=Phascolarctobacterium taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
2-dehydro-3-deoxyphosphooctonate aldolase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_11
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7348..8313
DNA (966bp) protein (322aa)
Arabinose-5-phosphate isomerase Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A373_PELCD
D-arabinose 5-phosphate isomerase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_12
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8315..8851
DNA (537bp) protein (179aa)
3-deoxy-manno-octulosonate-8-phosphatase (EC:3.1.3.45)
3-deoxy-manno-octulosonate-8-phosphatase bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_13
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8848..9402
DNA (555bp) protein (185aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PCY2_9BACT
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_14
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9399..9818
DNA (420bp) protein (140aa)
lptA; lipopolysaccharide ABC transporter periplasmic protein LptA
Lipopolysaccharide ABC transporter, periplasmic protein LptA bin=GWC2_Nitrospirae_57_13 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_15
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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9815..10420
DNA (606bp) protein (202aa)
ABC transporter related Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LK01_SYNFM
ABC transporter-like protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_16
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10576..11994
DNA (1419bp) protein (473aa)
RNA polymerase sigma-54 factor bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
rpoN; RNA polymerase sigma-54 factor RpoN
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_17
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12099..12413
DNA (315bp) protein (105aa)
Ribosomal subunit interface protein Tax=delta proteobacterium NaphS2 RepID=D8F9C1_9DELT
sigma 54 modulation protein/ribosomal protein S30EA
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_18
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12427..12897
DNA (471bp) protein (157aa)
Putative PTS IIA-like nitrogen-regulatory protein PtsN Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LJZ8_SYNFM
putative PTS IIA-like nitrogen-regulatory protein PtsN
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_19
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12906..13448
DNA (543bp) protein (181aa)
HPr kinase/phosphorylase Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=HPRK_GEOSL
hprK; HPr(Ser) kinase/phosphatase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_20
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13569..14438
DNA (870bp) protein (290aa)
glmZ(sRNA)-inactivating NTPase; K06958 UPF0042 nucleotide-binding protein bin=bin1_lowGC species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_21
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14440..14868
DNA (429bp) protein (143aa)
Pts system fructose IIA component bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
pts system fructose IIA component
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_22
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14868..15155
DNA (288bp) protein (96aa)
Phosphotransferase system, phosphocarrier protein HPr bin=GWC2_Proteo_65_14_Ab886 species=Thiorhodococcus drewsii genus=Thiorhodococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
ptsH; phosphocarrier protein HPr
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_23
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15133..16917
DNA (1785bp) protein (595aa)
Phosphoenolpyruvate-protein phosphotransferase bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
phosphoenolpyruvate-protein phosphotransferase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_24
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16940..18061
DNA (1122bp) protein (374aa)
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1363_25
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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18926..19831
DNA (906bp) protein (302aa)
Adenosylhomocysteinase Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LF64_SYNFM
S-adenosyl-L-homocysteine hydrolase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
Displaying 25 items

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