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PLM4_90_b2_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b2_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b2_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 201-250 of 558 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b2_sep16_scaffold_15115
Species: RBG_13_Deltaproteobacteria_47_9_curated (66.67%)
6 4939 bp 43.92 8.90 90.63
PLM4_90_b2_sep16_scaffold_12355
Class: Deltaproteobacteria (83.33%)
6 3627 bp 49.93 13.11 89.00
PLM4_90_b2_sep16_scaffold_1908
Species: RBG_16_Deltaproteobacteria_48_10_curated (83.33%)
6 6082 bp 49.18 20.74 96.33
PLM4_90_b2_sep16_scaffold_15373
Class: Deltaproteobacteria (83.33%)
6 3868 bp 49.35 15.32 81.98
PLM4_90_b2_sep16_scaffold_1656
Species: RBG_13_Deltaproteobacteria_52_11b_curated (50%)
6 6450 bp 44.42 9.77 96.33
PLM4_90_b2_sep16_scaffold_10593
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
6 3622 bp 44.01 7.74 63.78
PLM4_90_b2_sep16_scaffold_4696
Class: Deltaproteobacteria (100%)
6 4023 bp 48.42 13.57 90.98
PLM4_90_b2_sep16_scaffold_8484
Domain: Bacteria (83.33%)
6 4249 bp 48.03 8.40 78.37
PLM4_90_b2_sep16_scaffold_2182
Species: CG_Delta_05 (50%)
6 5701 bp 51.01 12.26 90.46
PLM4_90_b2_sep16_scaffold_4193
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
6 4247 bp 47.09 16.60 77.28
PLM4_90_b2_sep16_scaffold_5329
Class: Deltaproteobacteria (83.33%)
6 3784 bp 47.81 9.75 84.99
PLM4_90_b2_sep16_scaffold_9018
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
6 4229 bp 47.08 10.85 86.05
PLM4_90_b2_sep16_scaffold_3094
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
6 5524 bp 47.50 14.28 86.51
PLM4_90_b2_sep16_scaffold_8503
Class: Deltaproteobacteria (83.33%)
6 3000 bp 43.50 10.40 95.00
PLM4_90_b2_sep16_scaffold_4976
Class: Deltaproteobacteria (100%)
6 4622 bp 48.51 7.53 87.43
PLM4_90_b2_sep16_scaffold_3609
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
6 5886 bp 48.64 12.54 75.84
PLM4_90_b2_sep16_scaffold_29810
Phylum: Proteobacteria (50%)
6 3632 bp 50.14 6.28 91.52
PLM4_90_b2_sep16_scaffold_15932
Species: RBG_16_Deltaproteobacteria_47_11_curated (83.33%)
6 3792 bp 47.47 10.88 56.80
PLM4_90_b2_sep16_scaffold_1959
Species: RBG_19FT_COMBO_Chloroflexi_48_23_curated (50%)
6 6003 bp 47.98 11.12 90.35
PLM4_90_b2_sep16_scaffold_7912
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
6 4051 bp 46.33 12.44 80.65
PLM4_90_b2_sep16_scaffold_4224
Species: BJP_IG2069_Desfulfarculales_53_13 (66.67%)
6 5699 bp 50.64 8.98 94.28
PLM4_90_b2_sep16_scaffold_31633
Domain: Bacteria (50%)
6 3121 bp 47.20 7.02 79.69
PLM4_90_b2_sep16_scaffold_5866
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
6 4954 bp 44.93 17.08 87.93
PLM4_90_b2_sep16_scaffold_3375
Class: Deltaproteobacteria (50%)
6 4670 bp 47.15 23.00 65.72
PLM4_90_b2_sep16_scaffold_3632
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
6 4519 bp 48.64 15.60 80.59
PLM4_90_b2_sep16_scaffold_7152
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
6 5935 bp 46.99 10.79 74.20
PLM4_90_b2_sep16_scaffold_6248
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
6 3497 bp 46.44 14.71 80.30
PLM4_90_b2_sep16_scaffold_7153
Species: RBG_16_Deltaproteobacteria_48_10_curated (83.33%)
6 4021 bp 48.17 11.97 91.02
PLM4_90_b2_sep16_scaffold_7155
Class: Deltaproteobacteria (66.67%)
6 3274 bp 47.13 11.96 84.30
PLM4_90_b2_sep16_scaffold_4498
Class: Deltaproteobacteria (66.67%)
6 4101 bp 49.18 8.23 78.64
PLM4_90_b2_sep16_scaffold_20342
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
6 4778 bp 47.84 13.78 86.14
PLM4_90_b2_sep16_scaffold_8287
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
6 4571 bp 48.94 18.67 92.67
PLM4_90_b2_sep16_scaffold_7173
Species: BJP_IG2069_Desfulfarculales_53_13 (50%)
6 4727 bp 50.29 11.61 85.55
PLM4_90_b2_sep16_scaffold_13702
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
6 3308 bp 45.22 13.65 78.33
PLM4_90_b2_sep16_scaffold_9587
Class: Deltaproteobacteria (66.67%)
6 4845 bp 45.55 10.28 86.69
PLM4_90_b2_sep16_scaffold_21853
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
6 3557 bp 48.44 14.72 79.45
PLM4_90_b2_sep16_scaffold_10172
Domain: Bacteria (83.33%)
6 3587 bp 49.26 6.02 90.58
PLM4_90_b2_sep16_scaffold_3419
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
6 5181 bp 46.73 12.28 74.00
PLM4_90_b2_sep16_scaffold_6804
Species: RBG_19FT_COMBO_Syntrophobacterales_59_10_curated (50%)
6 5067 bp 49.12 15.93 87.80
PLM4_90_b2_sep16_scaffold_5918
Domain: Bacteria (83.33%)
6 3591 bp 47.59 13.66 43.53
PLM4_90_b2_sep16_scaffold_3172
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
6 6974 bp 50.65 19.19 94.77
PLM4_90_b2_sep16_scaffold_24673
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
6 4425 bp 48.36 17.22 68.20
PLM4_90_b2_sep16_scaffold_4046
Species: RBG_16_Deltaproteobacteria_48_10_curated (83.33%)
6 5505 bp 48.43 15.15 94.50
PLM4_90_b2_sep16_scaffold_1017
Class: Deltaproteobacteria (100%)
6 8502 bp 51.48 10.06 79.04
PLM4_90_b2_sep16_scaffold_4828
Class: Deltaproteobacteria (83.33%)
6 3966 bp 46.52 13.01 61.95
PLM4_90_b2_sep16_scaffold_1798
Species: RBG_16_Deltaproteobacteria_47_11_curated (83.33%)
6 8422 bp 48.98 14.48 87.59
PLM4_90_b2_sep16_scaffold_10478
Species: RBG_16_Deltaproteobacteria_48_10_curated (83.33%)
6 3617 bp 47.64 14.68 77.88
PLM4_90_b2_sep16_scaffold_5450
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
6 3747 bp 47.08 15.65 90.23
PLM4_90_b2_sep16_scaffold_2828
Class: Deltaproteobacteria (50%)
6 5057 bp 49.61 11.45 72.91
PLM4_90_b2_sep16_scaffold_3981
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
6 5114 bp 47.54 15.84 88.17
Displaying items 201-250 of 558 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.