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PLM4_90_b2_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b2_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b2_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 251-300 of 558 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b2_sep16_scaffold_5966
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
6 4813 bp 46.79 15.77 74.98
PLM4_90_b2_sep16_scaffold_15539
Class: Deltaproteobacteria (50%)
6 4691 bp 51.03 7.93 83.46
PLM4_90_b2_sep16_scaffold_20181
Domain: Bacteria (50%)
6 3135 bp 47.27 8.04 93.21
PLM4_90_b2_sep16_scaffold_5728
Class: Deltaproteobacteria (66.67%)
6 3648 bp 45.75 14.19 77.80
PLM4_90_b2_sep16_scaffold_5473
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
6 5727 bp 44.30 12.57 89.68
PLM4_90_b2_sep16_scaffold_7524
Species: RBG_16_Deltaproteobacteria_47_11_curated (83.33%)
6 6542 bp 47.19 11.88 87.04
PLM4_90_b2_sep16_scaffold_3238
Phylum: Proteobacteria (50%)
6 4759 bp 51.12 11.32 83.02
PLM4_90_b2_sep16_scaffold_22396
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
6 3744 bp 49.28 13.26 79.17
PLM4_90_b2_sep16_scaffold_23421
Class: Deltaproteobacteria (66.67%)
6 4460 bp 45.85 11.03 72.04
PLM4_90_b2_sep16_scaffold_4110
Species: RBG_16_Deltaproteobacteria_47_11_curated (83.33%)
6 5067 bp 48.08 13.80 71.46
PLM4_90_b2_sep16_scaffold_4879
Class: Deltaproteobacteria (66.67%)
6 7193 bp 50.03 12.26 78.58
PLM4_90_b2_sep16_scaffold_4369
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
6 6342 bp 48.31 12.35 79.99
PLM4_90_b2_sep16_scaffold_3260
Phylum: Nitrospirae (50%)
6 5296 bp 49.74 14.16 81.80
PLM4_90_b2_sep16_scaffold_12302
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
6 4074 bp 46.74 13.77 87.11
PLM4_90_b2_sep16_scaffold_1602
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
6 6529 bp 49.52 14.91 87.76
PLM4_90_b2_sep16_scaffold_4895
Class: Deltaproteobacteria (66.67%)
6 3941 bp 46.16 13.82 62.19
PLM4_90_b2_sep16_scaffold_8171
Class: Deltaproteobacteria (66.67%)
6 3059 bp 44.36 8.39 78.85
PLM4_90_b2_sep16_scaffold_11435
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
6 5345 bp 46.55 11.67 82.45
PLM4_90_b2_sep16_scaffold_3020
Class: Deltaproteobacteria (66.67%)
6 4915 bp 47.77 16.27 81.12
PLM4_90_b2_sep16_scaffold_9975
Class: Deltaproteobacteria (50%)
6 4144 bp 49.20 9.85 63.78
PLM4_90_b2_sep16_scaffold_3287
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
5 4734 bp 48.23 15.02 90.75
PLM4_90_b2_sep16_scaffold_874
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 8503 bp 48.36 17.13 89.33
PLM4_90_b2_sep16_scaffold_6676
Domain: Bacteria (80%)
5 4820 bp 48.28 7.16 68.40
PLM4_90_b2_sep16_scaffold_30357
Species: GWC2_Elusimicrobia_56_31_curated (60%)
5 3858 bp 48.24 5.95 96.97
PLM4_90_b2_sep16_scaffold_2655
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 5209 bp 44.94 22.69 97.97
PLM4_90_b2_sep16_scaffold_4155
Class: Deltaproteobacteria (60%)
5 4267 bp 47.20 13.32 85.77
PLM4_90_b2_sep16_scaffold_3302
Class: Deltaproteobacteria (60%)
5 4727 bp 51.20 9.81 85.04
PLM4_90_b2_sep16_scaffold_6175
Species: RBG_16_Deltaproteobacteria_47_11_curated (60%)
5 4528 bp 48.94 11.99 87.59
PLM4_90_b2_sep16_scaffold_7344
Class: Deltaproteobacteria (60%)
5 3231 bp 44.51 12.49 45.87
PLM4_90_b2_sep16_scaffold_13363
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (80%)
5 3557 bp 48.44 16.32 93.11
PLM4_90_b2_sep16_scaffold_13622
Class: Deltaproteobacteria (100%)
5 3225 bp 50.42 8.05 84.65
PLM4_90_b2_sep16_scaffold_3575
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 6879 bp 49.73 16.40 92.50
PLM4_90_b2_sep16_scaffold_15891
Class: Deltaproteobacteria (60%)
5 3402 bp 49.41 13.10 79.72
PLM4_90_b2_sep16_scaffold_17036
Class: Deltaproteobacteria (60%)
5 3593 bp 48.62 10.02 72.89
PLM4_90_b2_sep16_scaffold_11740
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 3737 bp 50.98 7.35 80.12
PLM4_90_b2_sep16_scaffold_6453
Class: Deltaproteobacteria (60%)
5 3447 bp 48.56 8.75 67.54
PLM4_90_b2_sep16_scaffold_5310
Class: Deltaproteobacteria (80%)
5 3792 bp 49.89 14.00 91.38
PLM4_90_b2_sep16_scaffold_9255
Species: RBG_16_Deltaproteobacteria_49_23_curated (60%)
5 3742 bp 44.44 10.22 83.22
PLM4_90_b2_sep16_scaffold_5823
Class: Deltaproteobacteria (100%)
5 3621 bp 41.12 17.85 94.28
PLM4_90_b2_sep16_scaffold_3073
Phylum: Proteobacteria (60%)
5 4879 bp 49.05 12.85 80.06
PLM4_90_b2_sep16_scaffold_11491
Class: Deltaproteobacteria (80%)
5 3341 bp 49.78 12.75 69.77
PLM4_90_b2_sep16_scaffold_1671
Class: Deltaproteobacteria (80%)
5 6434 bp 50.00 13.38 71.15
PLM4_90_b2_sep16_scaffold_13385
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 3347 bp 47.18 10.62 80.04
PLM4_90_b2_sep16_scaffold_5833
Class: Deltaproteobacteria (60%)
5 3618 bp 43.95 16.87 69.57
PLM4_90_b2_sep16_scaffold_3338
Class: Deltaproteobacteria (80%)
5 4697 bp 50.33 13.38 87.89
PLM4_90_b2_sep16_scaffold_2187
Class: Deltaproteobacteria (100%)
5 5693 bp 49.41 17.36 87.16
PLM4_90_b2_sep16_scaffold_24063
Domain: Bacteria (100%)
5 3107 bp 40.88 4.83 98.49
PLM4_90_b2_sep16_scaffold_929
Class: Deltaproteobacteria (100%)
5 8227 bp 49.95 12.93 89.81
PLM4_90_b2_sep16_scaffold_6478
Species: RBG_16_Deltaproteobacteria_47_11_curated (60%)
5 4062 bp 49.21 12.11 93.72
PLM4_90_b2_sep16_scaffold_16559
Class: Deltaproteobacteria (60%)
5 3712 bp 50.13 10.59 56.49
Displaying items 251-300 of 558 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.