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PLM4_90_b2_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b2_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b2_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 351-400 of 558 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b2_sep16_scaffold_2746
Class: Deltaproteobacteria (83.33%)
12 10070 bp 48.38 11.43 88.42
PLM4_90_b2_sep16_scaffold_1436
Species: RBG_16_Deltaproteobacteria_48_10_curated (71.43%)
7 8120 bp 48.47 14.13 88.52
PLM4_90_b2_sep16_scaffold_3999
Species: RBG_16_Chloroflexi_50_9_curated (66.67%)
3 4343 bp 51.74 12.99 88.56
PLM4_90_b2_sep16_scaffold_192
Class: Deltaproteobacteria (100%)
10 16135 bp 48.53 15.72 88.58
PLM4_90_b2_sep16_scaffold_161
Class: Deltaproteobacteria (95%)
20 22373 bp 49.52 15.47 88.63
PLM4_90_b2_sep16_scaffold_3076
Domain: Bacteria (88.89%)
9 5664 bp 48.46 9.40 88.65
PLM4_90_b2_sep16_scaffold_1402
Class: Deltaproteobacteria (75%)
8 10941 bp 50.75 13.18 88.65
PLM4_90_b2_sep16_scaffold_2863
Class: Deltaproteobacteria (85.71%)
7 5031 bp 45.72 13.18 88.67
PLM4_90_b2_sep16_scaffold_13085
Species: RBG_16_Deltaproteobacteria_47_11_curated (64.29%)
14 8509 bp 45.02 12.06 88.67
PLM4_90_b2_sep16_scaffold_411
Class: Deltaproteobacteria (71.43%)
21 20149 bp 48.39 11.28 88.72
PLM4_90_b2_sep16_scaffold_6410
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (100%)
3 3457 bp 47.58 10.98 88.78
PLM4_90_b2_sep16_scaffold_7947
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
4 4268 bp 50.91 9.03 88.78
PLM4_90_b2_sep16_scaffold_1219
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
8 7336 bp 49.69 14.50 88.78
PLM4_90_b2_sep16_scaffold_5437
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 5105 bp 46.95 13.13 88.80
PLM4_90_b2_sep16_scaffold_7636
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
3 3169 bp 47.84 15.00 88.80
PLM4_90_b2_sep16_scaffold_5443
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (100%)
4 3750 bp 44.83 15.56 88.80
PLM4_90_b2_sep16_scaffold_314
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
18 16492 bp 47.73 17.88 88.81
PLM4_90_b2_sep16_scaffold_21616
Class: Deltaproteobacteria (60%)
5 3253 bp 48.54 5.58 88.81
PLM4_90_b2_sep16_scaffold_5632
Domain: Bacteria (100%)
4 3681 bp 47.57 7.70 88.83
PLM4_90_b2_sep16_scaffold_10669
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
3 3417 bp 50.48 14.35 88.85
PLM4_90_b2_sep16_scaffold_4881
Class: Deltaproteobacteria (100%)
5 3947 bp 45.65 8.78 88.85
PLM4_90_b2_sep16_scaffold_11851
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (57.14%)
7 4694 bp 45.93 12.56 88.90
PLM4_90_b2_sep16_scaffold_8830
Class: Deltaproteobacteria (62.5%)
8 5566 bp 47.50 12.99 88.91
PLM4_90_b2_sep16_scaffold_4597
Class: Deltaproteobacteria (50%)
4 4061 bp 42.23 20.94 88.94
PLM4_90_b2_sep16_scaffold_296
Class: Deltaproteobacteria (94.12%)
17 16312 bp 48.43 20.61 88.96
PLM4_90_b2_sep16_scaffold_12355
Class: Deltaproteobacteria (83.33%)
6 3627 bp 49.93 13.11 89.00
PLM4_90_b2_sep16_scaffold_2309
Species: RBG_16_Deltaproteobacteria_47_11_curated (57.14%)
7 5565 bp 47.30 18.87 89.00
PLM4_90_b2_sep16_scaffold_779
Class: Deltaproteobacteria (60%)
10 9810 bp 47.97 7.37 89.05
PLM4_90_b2_sep16_scaffold_7574
Class: Deltaproteobacteria (60%)
5 3180 bp 54.40 5.99 89.06
PLM4_90_b2_sep16_scaffold_12031
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 3577 bp 47.22 10.36 89.07
PLM4_90_b2_sep16_scaffold_1140
Species: RBG_16_Deltaproteobacteria_49_23_curated (62.5%)
8 9195 bp 53.75 11.70 89.20
PLM4_90_b2_sep16_scaffold_2154
Class: Deltaproteobacteria (88.89%)
18 14147 bp 48.36 14.71 89.21
PLM4_90_b2_sep16_scaffold_25761
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3424 bp 44.54 5.70 89.28
PLM4_90_b2_sep16_scaffold_7105
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 3288 bp 47.35 14.60 89.32
PLM4_90_b2_sep16_scaffold_3446
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
4 4628 bp 50.11 13.74 89.33
PLM4_90_b2_sep16_scaffold_874
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 8503 bp 48.36 17.13 89.33
PLM4_90_b2_sep16_scaffold_7799
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
2 3131 bp 43.37 8.67 89.40
PLM4_90_b2_sep16_scaffold_4271
Species: RBG_16_Deltaproteobacteria_47_11_curated (64.71%)
17 10838 bp 47.67 15.79 89.46
PLM4_90_b2_sep16_scaffold_5135
Class: Deltaproteobacteria (80%)
5 5347 bp 44.75 9.43 89.49
PLM4_90_b2_sep16_scaffold_3034
Domain: Bacteria (66.67%)
3 4905 bp 44.28 11.47 89.54
PLM4_90_b2_sep16_scaffold_22121
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3124 bp 46.61 12.48 89.60
PLM4_90_b2_sep16_scaffold_16139
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 3073 bp 48.39 15.28 89.62
PLM4_90_b2_sep16_scaffold_3214
Class: Deltaproteobacteria (80%)
5 4778 bp 50.65 15.67 89.66
PLM4_90_b2_sep16_scaffold_14017
Class: Deltaproteobacteria (80%)
5 4068 bp 45.21 9.81 89.68
PLM4_90_b2_sep16_scaffold_5473
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
6 5727 bp 44.30 12.57 89.68
PLM4_90_b2_sep16_scaffold_2235
Phylum: Chloroflexi (60%)
5 5642 bp 49.40 12.79 89.70
PLM4_90_b2_sep16_scaffold_138
Class: Deltaproteobacteria (89.47%)
19 18990 bp 47.41 20.26 89.75
PLM4_90_b2_sep16_scaffold_929
Class: Deltaproteobacteria (100%)
5 8227 bp 49.95 12.93 89.81
PLM4_90_b2_sep16_scaffold_3879
Species: RBG_16_Deltaproteobacteria_48_10_curated (87.5%)
8 7971 bp 49.17 17.48 89.84
PLM4_90_b2_sep16_scaffold_2356
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 5526 bp 46.51 17.54 89.90
Displaying items 351-400 of 558 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.