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PLM4_90_b2_sep16_scaffold_980

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b2_sep16_scaffold_980_1
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1..234
DNA (234bp) protein (78aa)
PREDICTED: oligopeptide transport system permease protein AppC-like Tax=Amphimedon queenslandica RepID=UPI00021A5A50
appB; oligopeptide ABC transporter permease
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM4_90_b2_sep16_scaffold_980_2
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1270..2262
DNA (993bp) protein (331aa)
Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) Tax=Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 RepID=M5EB92_9FIRM
oligopeptide ABC transporter ATP-binding protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b2_sep16_scaffold_980_3
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2216..2383
DNA (168bp) protein (56aa)
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM4_90_b2_sep16_scaffold_980_4
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2392..4419)
DNA (2028bp) protein (676aa)
hypothetical protein PJC66_01800 bin=GWF2_Planctomycetes_50_10 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b2_sep16_scaffold_980_5
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4382..5311)
DNA (930bp) protein (310aa)
hypothetical protein Tax=Gemmata obscuriglobus RepID=UPI00016C3DD5
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b2_sep16_scaffold_980_6
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5436..6632)
DNA (1197bp) protein (399aa)
L-threonine ammonia-lyase (EC:4.3.1.19)
Putative threonine dehydratase catabolic Tax=Thermotoga sp. (strain RQ2) RepID=Q7WU60_THESQ
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b2_sep16_scaffold_980_7
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6636..7418)
DNA (783bp) protein (261aa)
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
ABC transporter
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b2_sep16_scaffold_980_8
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7415..8317)
DNA (903bp) protein (301aa)
Transport system permease protein Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GK81_9FIRM
transport system permease
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b2_sep16_scaffold_980_9
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8382..9284)
DNA (903bp) protein (301aa)
ABC-type transporter cobalamide binding protein Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LQ34_SYNAS
cobalamide ABC transporter substrate-binding protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b2_sep16_scaffold_980_10
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9281..10006)
DNA (726bp) protein (242aa)
hypothetical protein Tax=Methylovulum miyakonense RepID=UPI00035FFB24
TonB family protein
Tax=RBG_13_Deltaproteobacteria_52_11b_curated
PLM4_90_b2_sep16_scaffold_980_11
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11064..13412
DNA (2349bp) protein (783aa)
Radical SAM domain protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GD23_GEOUR
radical SAM domain-containing protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b2_sep16_scaffold_980_12
unknown

Not on your lists

13481..13582
DNA (102bp) protein (34aa)

This feature has no annotations

PLM4_90_b2_sep16_scaffold_980_13
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13768..15261
DNA (1494bp) protein (498aa)
Ribonuclease, Rne/Rng family Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E2E4_GEOLS
Rne/Rng family ribonuclease
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b2_sep16_scaffold_980_14
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15664..16479
DNA (816bp) protein (272aa)
Uncharacterized protein Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SM40_9DELT
hypothetical protein
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b2_sep16_scaffold_980_15
unknown

Not on your lists

comp(16582..16797)
DNA (216bp) protein (72aa)

This feature has no annotations

PLM4_90_b2_sep16_scaffold_980_16
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16943..17257
DNA (315bp) protein (105aa)
50S ribosomal protein L21 bin=GWD2_Deltaproteobacteria_55_8 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rplU; 50S ribosomal protein L21
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b2_sep16_scaffold_980_17
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


17547..17807
DNA (261bp) protein (87aa)
50S ribosomal protein L27 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=RL27_PELCD
rpmA; 50S ribosomal protein L27
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b2_sep16_scaffold_980_18
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17859..18281
DNA (423bp) protein (141aa)
spo0B-associated GTP-binding protein
GTPase obg bin=GWB2_Proteobacteria_55_19 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
Displaying 18 items

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