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PLM4_90_coex_sep16_scaffold_3158

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_coex_sep16_scaffold_3158_1
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..92)
DNA (90bp) protein (30aa)
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_3158_2
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(95..775)
DNA (681bp) protein (227aa)
Cobalamin biosynthesis protein CbiM Tax=Pelodictyon luteolum (strain DSM 273) RepID=Q3B2X2_PELLD
cobalt transport protein CbiM
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_3158_3
Candidatus Magnetoovum chiemensis, Candidatus Magnetoovum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(999..2357)
DNA (1359bp) protein (453aa)
hypothetical protein Tax=Omnitrophica bacterium SCGC AAA257-O07 RepID=UPI0003B75A6B
Carbohydrate-selective porin OprB {ECO:0000313|EMBL:KJR40837.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetoovum.;" source="Candidatus Magnetoovum chiemensis.;"
outer membrane channel, OprB family
PLM4_90_coex_sep16_scaffold_3158_4
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2443..2814)
DNA (372bp) protein (124aa)
hypothetical protein Tax=unclassified candidate division OP9 RepID=UPI00036EB810
nickel-responsive regulator
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_3158_5
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3000..3935
DNA (936bp) protein (312aa)
lipid A biosynthesis lauroyl acyltransferase (EC:2.3.1.-)
Lipid A biosynthesis lauroyl acyltransferase bin=GWB2_CP_45_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_3158_6
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3962..4612)
DNA (651bp) protein (217aa)
hypothetical protein Tax=Oceanobacillus kimchii RepID=UPI0003488EEB
methyltransferase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_3158_7
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4628..5452)
DNA (825bp) protein (275aa)
nitrate ABC transporter ATP-binding protein Tax=Curvibacter lanceolatus RepID=UPI00037F85BA
ABC transporter
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_3158_8
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5454..6395)
DNA (942bp) protein (314aa)
hypothetical protein Tax=Scytonema hofmanni RepID=UPI00035F892C
Alkanesulfonates-binding protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_3158_9
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6426..7382)
DNA (957bp) protein (319aa)
Putative ABC transporter, substrate binding protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MH60_9BACT
ABC transporter substrate-binding protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_3158_10
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7434..8381)
DNA (948bp) protein (316aa)
Putative ABC transporter, substrate binding protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MH60_9BACT
ABC transporter substrate-binding protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_3158_11
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8444..10699)
DNA (2256bp) protein (752aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II bin=GWA2_OP3_53_43 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
AMP-dependent synthetase and ligase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_3158_12
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10686..11252)
DNA (567bp) protein (189aa)
Transcriptional regulator, PadR-like family bin=GWF2_OP3_43_52 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
putative PadR family transcriptional regulator
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_3158_13
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11425..12753)
DNA (1329bp) protein (443aa)
Putative uncharacterized protein bin=GWC2_Syntrophus__56_31 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
HD-GYP domain-containing protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
Displaying 13 items

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