ggKbase home page

PLM4_90_coex_sep16_scaffold_1268

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_coex_sep16_scaffold_1268_1
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..505)
DNA (504bp) protein (168aa)
GTPase Obg Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ADM0_THEID
GTP-binding protein Obg/CgtA
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_1268_2
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(634..903)
DNA (270bp) protein (90aa)
50S ribosomal protein L27 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=RL27_PELCD
rpmA; 50S ribosomal protein L27
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_1268_3
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(857..1228)
DNA (372bp) protein (124aa)
50S ribosomal protein L21 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DU22_9BACL
rplU; 50S ribosomal protein L21
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_1268_4
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1379..1726)
DNA (348bp) protein (116aa)
F-type H+-transporting ATPase subunit a bin=GWA2_Deltaproteo_65_63 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
ATP synthase subunit c
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_1268_5
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1796..2521)
DNA (726bp) protein (242aa)
ATP synthase subunit A (EC:3.6.3.14)
ATP synthase subunit a Tax=Syntrophus aciditrophicus (strain SB) RepID=ATP6_SYNAS
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_1268_6
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2511..2903)
DNA (393bp) protein (131aa)
Uncharacterized protein Tax=delta proteobacterium NaphS2 RepID=D8EX69_9DELT
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_1268_7
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2903..4309)
DNA (1407bp) protein (469aa)
Quinolinate phosphoribosyl transferase bin=GWF2_Lentisphaerae_57_35 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
nicotinic acid phosphoribosyltransferase-like protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_1268_8
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4293..5318)
DNA (1026bp) protein (342aa)
4-hydroxy-tetrahydrodipicolinate synthase Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FM58_DESAA
dihydrodipicolinate synthase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_1268_9
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5409..6152)
DNA (744bp) protein (248aa)
RNA methyltransferase, TrmH family, group 3 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L3Z7_9BACI
RNA methyltransferase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_1268_10
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6471..6764
DNA (294bp) protein (98aa)
hypothetical protein, partial Tax=candidate division OP9 bacterium OP9-cSCG RepID=UPI00037B78D4
wbpA; UDP-N-acetyl-D-mannosaminuronate dehydrogenase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_1268_11
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

7339..7917
DNA (579bp) protein (193aa)
Putative transcriptional regulator, AsnC family Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZY82_DESOH
AsnC family transcriptional regulator
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_coex_sep16_scaffold_1268_12
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

8167..8607
DNA (441bp) protein (147aa)
Transcription termination factor NusG domain protein bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
transcription antitermination protein
Tax=RBG_13_Nitrospirae_41_22_curated
PLM4_90_coex_sep16_scaffold_1268_13
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

8991..9539
DNA (549bp) protein (183aa)
NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family (EC:5.1.3.2)
NAD-dependent epimerase/dehydratase bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=GWC2_Nitrospirae_56_14_curated
Displaying 13 items

View Taxonomy