ggKbase home page

PLM4_5_b1_sep16_scaffold_97

Search features with annotation key words

Displaying items 1-30 of 120 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_97_1
unknown

Not on your lists

comp(2..73)
DNA (72bp) protein (24aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_97_2
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(152..778)
DNA (627bp) protein (209aa)
Flagellar brake protein YcgR Tax=Thauera RepID=YCGR_THASP
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_97_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(970..2544)
DNA (1575bp) protein (525aa)
Selenoprotein O and cysteine-containing homologs Tax=Nitrosospira sp. APG3 RepID=M5DHS7_9PROT
UPF0061 protein EBAPG3_11420 {ECO:0000256|HAMAP-Rule:MF_00692}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_97_4
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2559..3047)
DNA (489bp) protein (163aa)
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_97_5
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

3124..4062
DNA (939bp) protein (313aa)
Putative uncharacterized protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTV9_SIDLE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_5_b1_sep16_scaffold_97_6
RBG_16_Euryarchaeota_41_19_curated, Euryarchaeota, Archaea

Not on your lists

4059..4841
DNA (783bp) protein (261aa)
Uncharacterized protein Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4VZS6_9EURY
hypothetical protein
Tax=RBG_16_Euryarchaeota_41_19_curated
PLM4_5_b1_sep16_scaffold_97_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

4897..5715
DNA (819bp) protein (273aa)
Putative uncharacterized protein Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTV9_SIDLE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_5_b1_sep16_scaffold_97_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5720..6418)
DNA (699bp) protein (233aa)
ABC transporter related bin=GWC2_Methylomirabilis_70_24 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_97_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(6415..7164)
DNA (750bp) protein (250aa)
Putative branched-chain amino acid ABC transporter, ATP-binding protein bin=GWC2_Methylomirabilis_70_24 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter-like protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_5_b1_sep16_scaffold_97_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7137..8075)
DNA (939bp) protein (313aa)
livM; putative ABC transport system, membrane protein bin=bin7_NC10_sister species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_97_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8072..8884)
DNA (813bp) protein (271aa)
Inner-membrane translocator bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Marinomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_97_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(8937..10154)
DNA (1218bp) protein (406aa)
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein bin=bin7_NC10_sister species=Acidovorax ebreus genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
extracellular ligand-binding receptor
Tax=CSP1_6_Rokubacteria
PLM4_5_b1_sep16_scaffold_97_13
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10327..11448
DNA (1122bp) protein (374aa)
putative exported solute binding protein bin=bin7_NC10_sister species=Rhizobium sp. genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
exported solute binding protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM4_5_b1_sep16_scaffold_97_14
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11467..11628)
DNA (162bp) protein (54aa)
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_97_15
unknown

Not on your lists

comp(11856..11954)
DNA (99bp) protein (33aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_97_16
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12002..12619
DNA (618bp) protein (206aa)
Methylase involved in ubiquinone/menaquinone biosynthesis bin=GWD2_Deltaproteobacteria_55_8 species=Burkholderia sp. BT03 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
methyltransferase domain protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_97_17
unknown

Not on your lists

12710..14002
DNA (1293bp) protein (431aa)
Cytochrome P450 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JSY1_HYPDA
Cytochrome P450 {ECO:0000313|EMBL:CPR19380.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
cytochrome P450
PLM4_5_b1_sep16_scaffold_97_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14003..14761)
DNA (759bp) protein (253aa)
Phosphate regulon transcriptional regulatory protein PhoB Tax=Streptomyces RepID=D9UU16_9ACTO
winged helix family two component transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_97_19
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14791..15828)
DNA (1038bp) protein (346aa)
GTP-binding protein HflX Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HAY0_9BRAD
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJC40814.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_97_20
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15983..17644)
DNA (1662bp) protein (554aa)
Quinohemoprotein alcohol dehydrogenase ADH IIB Tax=Betaproteobacteria bacterium MOLA814 RepID=V4YGH9_9PROT
quinoprotein ethanol dehydrogenase
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
PLM4_5_b1_sep16_scaffold_97_21
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17728..18111)
DNA (384bp) protein (128aa)
Uncharacterized protein Tax=Polaromonas sp. CF318 RepID=J3D3R3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL84064.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_97_22
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18122..18928)
DNA (807bp) protein (269aa)
Short-chain dehydrogenase/reductase SDR Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZY48_DESOH
short-chain dehydrogenase/reductase SDR
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
PLM4_5_b1_sep16_scaffold_97_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18951..19922
DNA (972bp) protein (324aa)
2-dehydropantoate 2-reductase Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DBR1_BRAJP
2-dehydropantoate 2-reductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_97_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19968..21203
DNA (1236bp) protein (412aa)
Major facilitator superfamily MFS_1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TJY5_TISMK
ybfB; major facilitator superfamily protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_97_25
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21285..21488)
DNA (204bp) protein (68aa)
Cold-shock DNA-binding protein family Tax=Dechloromonas aromatica (strain RCB) RepID=Q47G94_DECAR
cold-shock DNA-binding protein family protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_97_26
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21674..22867
DNA (1194bp) protein (398aa)
Response regulator receiver modulated metal dependent phosphohydrolase Tax=Shewanella RepID=A1RG58_SHESW
response regulator receiver modulated metal dependent phosphohydrolase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_97_27
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22986..24863
DNA (1878bp) protein (626aa)
Probable potassium transport system protein kup Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GT67_CUPNN
kup; potassium transport system protein kup
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_97_28
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24880..26178)
DNA (1299bp) protein (433aa)
C4-dicarboxylate ABC transporter permease Tax=Limnohabitans sp. Rim47 RepID=UPI0002F6A34C
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_97_29
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26175..26675)
DNA (501bp) protein (167aa)
Tripartite ATP-independent periplasmic Tax=Roseibium sp. TrichSKD4 RepID=E2CBQ3_9RHOB
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_97_30
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26672..27694)
DNA (1023bp) protein (341aa)
Trap dicarboxylate transporter-dctp subunit Tax=Hydrogenophaga sp. PBC RepID=I4MSB2_9BURK
C4-dicarboxylate ABC transporter substrate-binding protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
Displaying items 1-30 of 120 in total

View Taxonomy