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PLM4_5_b1_sep16_scaffold_123

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_123_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..675)
DNA (675bp) protein (225aa)
Type II secretion system protein F Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2IXI5_PSEUL
gspF; type II secretion system protein F
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_123_2
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(680..1117)
DNA (438bp) protein (146aa)
type II secretion systen protein G; K02456 general secretion pathway protein G bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
tyep II secretion system protein G
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_123_3
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1287..3596)
DNA (2310bp) protein (770aa)
Uncharacterized protein Tax=Cupriavidus sp. HPC(L) RepID=V2GJR5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ESH88440.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_123_4

Not on your lists

3844..5319
DNA (1476bp) protein (492aa)
glucose dehydrogenase Tax=Methylohalobius crimeensis RepID=UPI0003B50816
Uncharacterized protein {ECO:0000313|EMBL:KKL91671.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
CHRD domain-containing protein
PLM4_5_b1_sep16_scaffold_123_5
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(5380..5934)
DNA (555bp) protein (185aa)
hypothetical protein Tax=Methylohalobius crimeensis RepID=UPI0003B33A6A
CHRD domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM4_5_b1_sep16_scaffold_123_6
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6178..7857)
DNA (1680bp) protein (560aa)
Uncharacterized protein Tax=Bradyrhizobium sp. WSM1253 RepID=I2QH54_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EIG59110.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_123_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7937..10285)
DNA (2349bp) protein (783aa)
Uncharacterized protein Tax=Variovorax paradoxus B4 RepID=T1X684_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU48068.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
PLM4_5_b1_sep16_scaffold_123_8
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(10317..12419)
DNA (2103bp) protein (701aa)
Uncharacterized protein Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QPL4_SPILD
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_5_b1_sep16_scaffold_123_9
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_52_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12436..14085)
DNA (1650bp) protein (550aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036BCB47
tannase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_52_10_curated
PLM4_5_b1_sep16_scaffold_123_10
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14100..16181)
DNA (2082bp) protein (694aa)
Uncharacterized protein Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QPL4_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB40673.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
PLM4_5_b1_sep16_scaffold_123_11
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

comp(16222..17805)
DNA (1584bp) protein (528aa)
hypothetical protein Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B4FD67
tannase and feruloyl esterase
Tax=RBG_16_Acidobacteria_64_8_curated
PLM4_5_b1_sep16_scaffold_123_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18085..20547
DNA (2463bp) protein (821aa)
Uncharacterized protein Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y234_RAMTT
Variovorax paradoxus strain MEDvA23 contig_65, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25703.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_123_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

20492..22195
DNA (1704bp) protein (568aa)
hypothetical protein Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B4FD67
tannase and feruloyl esterase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_5_b1_sep16_scaffold_123_14
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22275..23294
DNA (1020bp) protein (340aa)
SMP-30/Gluconolaconase/LRE domain protein bin=GWA2_Deltaproteo_65_63 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
SMP-30/gluconolaconase/LRE domain-containing protein
Tax=RBG_16_Gamma2_60_9_curated
PLM4_5_b1_sep16_scaffold_123_15
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23480..25717
DNA (2238bp) protein (746aa)
hypothetical protein Tax=Variovorax paradoxus RepID=UPI00035F3583
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
PLM4_5_b1_sep16_scaffold_123_16
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25747..27894
DNA (2148bp) protein (716aa)
Uncharacterized protein Tax=Microvirga sp. WSM3557 RepID=I4Z1E3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM30035.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_123_17
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28072..29358
DNA (1287bp) protein (429aa)
Uncharacterized protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HTR0_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL96397.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
PLM4_5_b1_sep16_scaffold_123_18
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29445..30677
DNA (1233bp) protein (411aa)
Uncharacterized protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HTQ9_RUBGI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL96396.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
PLM4_5_b1_sep16_scaffold_123_19
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30618..31481)
DNA (864bp) protein (288aa)
Putative AraC-family transcriptional regulator Tax=Azoarcus sp. (strain BH72) RepID=A1K1F3_AZOSB
AraC family transcriptional regulator
Putative AraC-family transcriptional regulator {ECO:0000313|EMBL:CAL92658.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
PLM4_5_b1_sep16_scaffold_123_20
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

31712..33865
DNA (2154bp) protein (718aa)
hypothetical protein Tax=Methylobacterium sp. MB200 RepID=UPI0003477699
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM4_5_b1_sep16_scaffold_123_21
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33933..35798)
DNA (1866bp) protein (622aa)
gamma-glutamyltranspeptidase (EC:2.3.2.2)
Gamma-glutamyltranspeptidase Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WS51_9BURK
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:EHR72848.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
PLM4_5_b1_sep16_scaffold_123_22
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35972..38227
DNA (2256bp) protein (752aa)
Conserved hypopthetical protein Tax=Streptomyces RepID=C9Z9J1_STRSW
hypothetical protein
Conserved hypopthetical protein {ECO:0000313|EMBL:CBG74665.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabies (strain 87.22) (Streptomyces scabiei).;"
PLM4_5_b1_sep16_scaffold_123_23
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38228..39928)
DNA (1701bp) protein (567aa)
5-oxoprolinase Tax=Oceanibaculum indicum P24 RepID=K2IWJ2_9PROT
5-oxoprolinase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
PLM4_5_b1_sep16_scaffold_123_24
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39962..40744
DNA (783bp) protein (261aa)
hypothetical protein Tax=Cupriavidus sp. WS RepID=UPI000365D45B
enoyl-CoA hydratase/isomerase family protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_123_25
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40748..41695
DNA (948bp) protein (316aa)
Extra-cytoplasmic solute receptor Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LFV8_RALME
bugT; ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_123_26
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41817..42338)
DNA (522bp) protein (174aa)
Uncharacterized protein Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I115_AZOC5
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
PLM4_5_b1_sep16_scaffold_123_27
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42335..44344)
DNA (2010bp) protein (670aa)
N-methylhydantoinase A Tax=Oceanibaculum indicum P24 RepID=K2JI27_9PROT
N-methylhydantoinase A/acetone carboxylase, beta subunit
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
PLM4_5_b1_sep16_scaffold_123_28
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44341..45024)
DNA (684bp) protein (228aa)
ABC transporter Tax=Herbaspirillum seropedicae RepID=UPI0002F9FDC4
ABC transporter family protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
PLM4_5_b1_sep16_scaffold_123_29
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45017..45247)
DNA (231bp) protein (77aa)
ABC transporter, ATP-binding protein Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A5U2_9PROT
ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
Displaying 29 items

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