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PLM4_5_b1_sep16_scaffold_170

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_170_1
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1094)
DNA (1092bp) protein (364aa)
Uncharacterized protein Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LUI3_DINSH
hypothetical protein
Tax=RBG_16_Anaeromyxobacter_69_14_curated
PLM4_5_b1_sep16_scaffold_170_2
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1165..1866)
DNA (702bp) protein (234aa)
dnaQ; DNA polymerase III subunit epsilon (EC:2.7.7.7)
DNA polymerase III subunit epsilon Tax=Herbaspirillum sp. JC206 RepID=UPI0002E4FD5A
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_5_b1_sep16_scaffold_170_3
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1853..2293)
DNA (441bp) protein (147aa)
rnhA; ribonuclease H (EC:3.1.26.4)
Ribonuclease H Tax=Ralstonia sp. PBA RepID=I9W5D3_9RALS
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_170_4
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2286..2969)
DNA (684bp) protein (228aa)
methyltransferase type 11 Tax=Azoarcus toluclasticus RepID=UPI000370BB6B
methylase involved in ubiquinone/menaquinone biosynthesis
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_170_5
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3064..3828
DNA (765bp) protein (255aa)
hydroxyacylglutathione hydrolase (EC:3.1.2.6)
Hydroxyacylglutathione hydrolase Tax=Sulfuricella denitrificans skB26 RepID=S6AK75_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_170_6
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3866..5380
DNA (1515bp) protein (505aa)
LysM repeat-containing protein Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QQ29_AZOSU
LysM repeat-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_170_7
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5402..7192)
DNA (1791bp) protein (597aa)
peptide ABC transporter ATPase (EC:3.6.3.24 3.6.3.31)
Peptide ABC transporter ATPase Tax=Sulfuricella denitrificans skB26 RepID=S6B2U6_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_170_8
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7189..8541)
DNA (1353bp) protein (451aa)
Binding-protein-dependent transport systems inner membrane component Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6J8_NITMU
binding-protein dependent transport system inner membrane protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_170_9
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8543..9520)
DNA (978bp) protein (326aa)
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) Tax=Nitrosospira sp. APG3 RepID=M5DL17_9PROT
binding-protein dependent transport system inner membrane protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_170_10
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9517..11589)
DNA (2073bp) protein (691aa)
ABC-type dipeptide transport system, periplasmic component Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJU3_AZOSU
dipeptide ABC transporter periplasmic protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_170_11
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11613..12410
DNA (798bp) protein (266aa)
Enoyl-ACP reductase Tax=Cupriavidus sp. HPC(L) RepID=V2J721_9BURK
enoyl-(acyl carrier protein) reductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_170_12
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12407..13372
DNA (966bp) protein (322aa)
protein bugT bin=bin7_NC10_sister species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
bug43; hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_170_13
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13373..15235)
DNA (1863bp) protein (621aa)
PpiC-type peptidyl-prolyl cis-trans isomerase Tax=Dechloromonas aromatica (strain RCB) RepID=Q47EQ2_DECAR
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_170_trna_3
unknown

Not on your lists

comp(15251..15324)
DNA (74bp)
transferRNA Asp
PLM4_5_b1_sep16_scaffold_170_trna_2
unknown

Not on your lists

comp(15342..15414)
DNA (73bp)
transferRNA Val
PLM4_5_b1_sep16_scaffold_170_14
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15448..15705)
DNA (258bp) protein (86aa)
Bacterial nucleoid DNA-binding protein Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJU0_AZOSU
nucleoid DNA-binding protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_170_15
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15731..18160)
DNA (2430bp) protein (810aa)
ATP-dependent protease La (EC:3.4.21.53)
Lon protease Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y6J2_NITMU
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_170_16
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18249..19520)
DNA (1272bp) protein (424aa)
ATP-dependent Clp protease ATP-binding subunit ClpX Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QJT8_AZOSU
endopeptidase Clp ATP-binding regulatory subunit ClpX
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM4_5_b1_sep16_scaffold_170_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19521..20150)
DNA (630bp) protein (210aa)
ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
Clp protease proteolytic subunit ClpP Tax=Thiobacillus denitrificans RepID=UPI00037455E4
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_170_18
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20147..21451)
DNA (1305bp) protein (435aa)
Trigger factor Tax=Azoarcus sp. KH32C RepID=H0PV94_9RHOO
tig; trigger factor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_170_trna_1
unknown

Not on your lists

comp(21482..21563)
DNA (82bp)
transferRNA Leu
PLM4_5_b1_sep16_scaffold_170_19
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21602..22405
DNA (804bp) protein (268aa)
phytoene synthase Tax=Azoarcus toluclasticus RepID=UPI00036FAE0D
terpenoid synthase-related protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM4_5_b1_sep16_scaffold_170_20
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22402..23235
DNA (834bp) protein (278aa)
hpnD; squalene synthase HpnD (EC:2.5.1.21)
phytoene synthase Tax=Massilia niastensis RepID=UPI000375990C
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_170_21
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23220..24446
DNA (1227bp) protein (409aa)
Phytoene desaturase, pro-zeta-carotene producing Tax=Collimonas fungivorans (strain Ter331) RepID=G0AH31_COLFT
phytoene desaturase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_170_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24460..25281
DNA (822bp) protein (274aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YZ5_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_170_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25307..26653)
DNA (1347bp) protein (449aa)
DNA repair protein RadA Tax=Uliginosibacterium gangwonense RepID=UPI00035C4216
DNA repair protein RadA
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_170_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26653..27723)
DNA (1071bp) protein (357aa)
alanine racemase (EC:5.1.1.1)
Alanine racemase Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RSN4_ACCPU
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_170_25
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27770..29047
DNA (1278bp) protein (426aa)
Major facilitator superfamily MFS_1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HKH8_RUBGI
major facilitator superfamily protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_170_26
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29150..29701)
DNA (552bp) protein (184aa)
Phage SPO1 DNA polymerase-related protein bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
DNA polymerase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_170_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29827..30288)
DNA (462bp) protein (154aa)
alanine acetyltransferase Tax=Methylotenera RepID=UPI00036FFA5F
ribosomal-protein-alanine acetyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Displaying items 1-30 of 42 in total

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