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PLM4_5_b1_sep16_scaffold_232

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_232_1
R_Gallionellales_60_31, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1922
DNA (1920bp) protein (640aa)
PAS/PAC sensor hybrid histidine kinase bin=GWC2_Geobacteraceae_55_20 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
PAS/PAC sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_02_Gallionellales_60_31_curated
PLM4_5_b1_sep16_scaffold_232_2
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2150..3595
DNA (1446bp) protein (482aa)
DNA repair protein RecN Tax=Sulfuricella denitrificans skB26 RepID=S6ABJ3_9PROT
DNA repair protein RecN
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_232_3
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3592..4029)
DNA (438bp) protein (146aa)
Ferric uptake regulator Tax=Candidatus Glomeribacter gigasporarum BEG34 RepID=G2J819_9BURK
Fur family ferric uptake regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_232_4
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4049..4396
DNA (348bp) protein (116aa)
Outer membrane protein assembly factor BamE Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1D7I0_LARHH
smpA; SmpA/OmlA
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
PLM4_5_b1_sep16_scaffold_232_5
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4393..5166
DNA (774bp) protein (258aa)
dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
dihydrodipicolinate reductase (EC:1.3.1.26)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_232_6
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5252..6391
DNA (1140bp) protein (380aa)
carbamoyl-phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
carbamoyl-phosphate synthase small subunit
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_232_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6375..9614
DNA (3240bp) protein (1080aa)
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain Tax=Methyloversatilis universalis FAM5 RepID=F5R825_9RHOO
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_232_8
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9614..10087
DNA (474bp) protein (158aa)
Transcription elongation factor GreA Tax=Thauera sp. 63 RepID=N6YBL7_9RHOO
transcription elongation factor GreA
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_232_9
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10388..11191)
DNA (804bp) protein (268aa)
Methyltransferase type 11 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U3I3_9CHLR
type 11 methyltransferase
Tax=BJP_IG2069_Syntrophobacterales_46_30
PLM4_5_b1_sep16_scaffold_232_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(11221..11523)
DNA (303bp) protein (101aa)
hypothetical protein Tax=Methylosarcina fibrata RepID=UPI00036C9FFA
plasmid stabilization system
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_5_b1_sep16_scaffold_232_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(11520..11750)
DNA (231bp) protein (77aa)
hypothetical protein Tax=Methylosarcina fibrata RepID=UPI00035EA639
addiction module antitoxin RelB
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_5_b1_sep16_scaffold_232_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11932..12534
DNA (603bp) protein (201aa)
Ribosomal RNA large subunit methyltransferase E Tax=Marichromatium purpuratum 984 RepID=F9U0Q5_MARPU
rrmJ; 23S rRNA methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_232_13
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12614..14503
DNA (1890bp) protein (630aa)
ATP-dependent zinc metalloprotease FtsH Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHK0_AZOSU
ATP-dependent metalloprotease FtsH
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_232_14
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14500..15318
DNA (819bp) protein (273aa)
Dihydropteroate synthase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHJ9_AZOSU
dihydropteroate synthase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_232_15
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15315..16655
DNA (1341bp) protein (447aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase Tax=Thauera RepID=C4ZKH4_THASP
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_232_16
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

17064..18419
DNA (1356bp) protein (452aa)
Peptidase S8 and S53 subtilisin kexin sedolisin bin=GWC2_Nitrospirae-rel_56_14 species=Halothiobacillus neapolitanus genus=Halothiobacillus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
peptidase S8 and S53 subtilisin kexin sedolisin
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_5_b1_sep16_scaffold_232_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18487..18834
DNA (348bp) protein (116aa)
Transcriptional regulator, ArsR family Tax=Burkholderia cenocepacia H111 RepID=G7HA86_9BURK
transcriptional regulator, ArsR family
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_232_18
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18859..19878
DNA (1020bp) protein (340aa)
Arsenite efflux pump ACR3 Tax=Magnetospirillum sp. SO-1 RepID=M2Z9B9_9PROT
arsB; arsenite resistance protein ArsB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM4_5_b1_sep16_scaffold_232_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19875..21185
DNA (1311bp) protein (437aa)
Uncharacterized protein Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VVT8_POLNA
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_232_20
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21109..22077)
DNA (969bp) protein (323aa)
cation diffusion facilitator family transporter
cation efflux protein; K03295 cation efflux system protein, CDF family bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_232_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22107..22619
DNA (513bp) protein (171aa)
arsC1; putative arsenate reductase (glutaredoxin) (EC:1.20.4.1)
hypothetical protein Tax=Thiobacillus thioparus RepID=UPI0003661420
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_232_22
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22680..23654
DNA (975bp) protein (325aa)
Phosphate binding protein Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XXE0_LEPCP
phosphate-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
PLM4_5_b1_sep16_scaffold_232_23
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23723..24673
DNA (951bp) protein (317aa)
Phosphate ABC transporter, permease protein PstC Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHJ6_AZOSU
phosphate ABC transporter, permease protein PstC
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
PLM4_5_b1_sep16_scaffold_232_24
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24673..25599
DNA (927bp) protein (309aa)
phosphate ABC transporter permease Tax=Methyloversatilis universalis RepID=UPI0003742D47
phosphate ABC transporter, permease protein PstA
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
PLM4_5_b1_sep16_scaffold_232_25
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25593..26387
DNA (795bp) protein (265aa)
Phosphate ABC transporter, ATP-binding protein Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHJ4_AZOSU
phosphate ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_232_26
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26534..28315
DNA (1782bp) protein (594aa)
Fumarate reductase flavoprotein subunit Tax=Phaeospirillum molischianum DSM 120 RepID=H8FXJ3_PHAMO
fumarate reductase flavoprotein subunit
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_5_b1_sep16_scaffold_232_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28315..29058
DNA (744bp) protein (248aa)
Succinate dehydrogenase iron-sulfur protein Tax=Caenispirillum salinarum AK4 RepID=K9GZZ0_9PROT
succinate dehydrogenase iron-sulfur protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_5_b1_sep16_scaffold_232_28
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29043..29444
DNA (402bp) protein (134aa)
Fumarate reductase subunit C Tax=Caenispirillum salinarum AK4 RepID=K9HKG5_9PROT
fumarate reductase subunit C
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_232_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29447..29788
DNA (342bp) protein (114aa)
hypothetical protein Tax=Novispirillum itersonii RepID=UPI000381F527
fumarate reductase subunit D
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_232_30
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29803..30564
DNA (762bp) protein (254aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6AI54_9PROT
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
Displaying items 1-30 of 60 in total

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