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PLM4_5_b1_sep16_scaffold_259

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_259_1
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1419)
DNA (1419bp) protein (473aa)
ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y664_NITMU
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_259_2
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1684..2226)
DNA (543bp) protein (181aa)
Anhydro-N-acetylmuramyl-tripeptide amidase (AmpD protein) Tax=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) RepID=Q7P0K1_CHRVO
ampD; N-acetyl-anhydromuranmyl-L-alanine amidase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_259_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2210..3589)
DNA (1380bp) protein (460aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QM42_AZOSU
two component sigma-54 specific Fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_259_4
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3586..5181)
DNA (1596bp) protein (532aa)
Integral membrane sensor signal transduction histidine kinase Tax=Sulfuricella denitrificans skB26 RepID=S6ACV9_9PROT
histidine kinase
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_259_5
unknown

Not on your lists

comp(5181..5405)
DNA (225bp) protein (75aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_259_6
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5795..6376
DNA (582bp) protein (194aa)
TetR family transcriptional regulator Tax=Ralstonia solanacearum RepID=UPI000361461C
TetR family transcriptional regulator {ECO:0000313|EMBL:EYR70235.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
Transcriptional regulator, TetR family
PLM4_5_b1_sep16_scaffold_259_7
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6462..7292
DNA (831bp) protein (277aa)
short-chain dehydrogenase Tax=Bradyrhizobium japonicum RepID=UPI000370F88F
short chain dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_259_8
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7289..8122
DNA (834bp) protein (278aa)
Alcohol dehydrogenase, zinc-binding protein Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q12HC4_POLSJ
zinc-binding alcohol dehydrogenase
Alcohol dehydrogenase, zinc-binding protein {ECO:0000313|EMBL:ABE42068.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
PLM4_5_b1_sep16_scaffold_259_9
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8119..8283
DNA (165bp) protein (55aa)
Uncharacterized protein Tax=Ralstonia solanacearum SD54 RepID=V4ZUP2_RALSL
qor; quinone oxidoreductase, nadph-dependent
Quinone oxidoreductase, nadph-dependent {ECO:0000313|EMBL:AEG71182.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (strain Po82).;"
PLM4_5_b1_sep16_scaffold_259_10
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8307..9668
DNA (1362bp) protein (454aa)
MATE efflux family protein Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07JW4_RHOP5
MATE efflux family protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
PLM4_5_b1_sep16_scaffold_259_trna_3
unknown

Not on your lists

comp(9689..9762)
DNA (74bp)
transferRNA Pro
PLM4_5_b1_sep16_scaffold_259_11
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9776..10810)
DNA (1035bp) protein (345aa)
Geranylgeranyl pyrophosphate synthase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QM66_AZOSU
geranylgeranyl pyrophosphate synthase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM4_5_b1_sep16_scaffold_259_12
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10887..11204
DNA (318bp) protein (106aa)
50S ribosomal protein L21 Tax=Ralstonia RepID=B5SIE7_RALSL
rplU; 50S ribosomal subunit protein L21
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_259_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11221..11478
DNA (258bp) protein (86aa)
50S ribosomal protein L27 Tax=Nitrosomonas sp. AL212 RepID=F9ZG58_9PROT
rpmA; 50S ribosomal subunit protein L27
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_259_14
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11538..12572
DNA (1035bp) protein (345aa)
GTPase Obg Tax=Burkholderia rhizoxinica (strain DSM 19002 / CIP 109453 / HKI 454) RepID=E5ALJ2_BURRH
GTP-binding protein CgtA
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_5_b1_sep16_scaffold_259_15
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12578..13696
DNA (1119bp) protein (373aa)
gamma-glutamyl kinase (EC:2.7.2.11)
Glutamate 5-kinase Tax=Ralstonia pickettii (strain 12D) RepID=C6BDZ0_RALP1
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_259_16
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13693..14106)
DNA (414bp) protein (138aa)
CNP1-like family Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QME9_AZOSU
CNP1-like family
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_259_17
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14232..14813)
DNA (582bp) protein (194aa)
hypothetical protein Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI000380942A
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_5_b1_sep16_scaffold_259_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14816..15238)
DNA (423bp) protein (141aa)
rubrerythrin Tax=Rhodocyclaceae RepID=UPI000361AF9E
rubrerythrin
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_259_19
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15378..15893)
DNA (516bp) protein (172aa)
RNA pyrophosphohydrolase Tax=Methyloversatilis sp. NVD RepID=UPI000381269B
ADP-ribose pyrophosphatase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_5_b1_sep16_scaffold_259_20
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15969..17675
DNA (1707bp) protein (569aa)
Proline--tRNA ligase Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RUP2_ACCPU
prolyl-tRNA synthetase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_5_b1_sep16_scaffold_259_21
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17675..18280
DNA (606bp) protein (202aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI00035F75C3
lytic transglycosylase subunit
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_259_22
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18282..19247
DNA (966bp) protein (322aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI000376A304
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_259_23
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19244..21208
DNA (1965bp) protein (655aa)
Transglutaminase-like enzyme, predicted cysteine protease Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QHZ1_AZOSU
transglutaminase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_259_24
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21223..22224
DNA (1002bp) protein (334aa)
hypothetical protein Tax=Rhodocyclus sp. UW 659-1-F08 RepID=UPI000371C81C
lytic murein transglycosylase B
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_259_25
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22231..23211)
DNA (981bp) protein (327aa)
hypothetical protein Tax=Methyloversatilis universalis RepID=UPI00036AC8F1
peptidase M23
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_259_26
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23223..23912)
DNA (690bp) protein (230aa)
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RSH5_ACCPU
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_259_27
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23909..24652)
DNA (744bp) protein (248aa)
surE; stationary phase survival protein SurE (EC:3.6.1.11)
5'-nucleotidase SurE Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z027_9RHOO
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_5_b1_sep16_scaffold_259_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24683..25849)
DNA (1167bp) protein (389aa)
caiA; acyl-CoA dehydrogenase (EC:1.3.99.3)
Acyl-CoA dehydrogenase domain protein Tax=Herbaspirillum sp. GW103 RepID=I3CWJ0_9BURK
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_259_29
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25834..26739)
DNA (906bp) protein (302aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase Tax=Ideonella sp. B508-1 RepID=UPI000344E2C9
Tax=RBG_16_Betaproteobacteria_66_20_curated
Displaying items 1-30 of 46 in total

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