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PLM4_5_b1_sep16_scaffold_305

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_305_1
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..528
DNA (528bp) protein (176aa)
Uncharacterized protein Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P8Q7_AROAE
Uncharacterized protein {ECO:0000313|EMBL:KIF83940.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_305_2
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

790..1020
DNA (231bp) protein (77aa)
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_305_3
unknown

Not on your lists

1095..1217
DNA (123bp) protein (41aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_305_4
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1225..1659
DNA (435bp) protein (145aa)
hypothetical protein Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B5312B
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_305_5
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1656..1865
DNA (210bp) protein (70aa)
hypothetical protein Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B65036
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_305_6
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2030..2419)
DNA (390bp) protein (130aa)
Uncharacterized protein Tax=Sphingobium baderi LL03 RepID=T0GN47_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB02107.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
PilT protein
PLM4_5_b1_sep16_scaffold_305_7
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2416..2673)
DNA (258bp) protein (86aa)
Transcriptional regulator, AbrB family Tax=Mesorhizobium sp. STM 4661 RepID=M5F556_9RHIZ
antitoxin, AbrB family
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_305_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2872..3321)
DNA (450bp) protein (150aa)
hypothetical protein
KilA-N, DNA-binding domain protein bin=GWA2_Methylomirabilis_73_35 species=Opitutaceae bacterium TAV5 genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_305_9
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3475..4233)
DNA (759bp) protein (253aa)
Ethanolamine ammonia-lyase light chain {ECO:0000256|SAAS:SAAS00064961}; EC=4.3.1.7 {ECO:0000256|SAAS:SAAS00064958};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
ethanolamine ammonia-lyase (EC:4.3.1.7)
Ethanolamine ammonia-lyase, small subunit Tax=Acidovorax sp. CF316 RepID=J0U659_9BURK
PLM4_5_b1_sep16_scaffold_305_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4351..4878
DNA (528bp) protein (176aa)
Putative helix-hairpin-helix DNA-binding motif-containing protein Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2GGA5_DESGI
putative helix-hairpin-helix DNA-binding motif-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_305_11
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4875..5525
DNA (651bp) protein (217aa)
Putative uncharacterized protein Tax=Variovorax paradoxus RepID=C5D090_VARPS
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_305_12
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5607..5918)
DNA (312bp) protein (104aa)
DNA polymerase beta domain protein region Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RUB3_ACCPU
DNA polymerase beta domain-containing protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_305_13
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5932..6276)
DNA (345bp) protein (115aa)
hypothetical protein Tax=Oscillatoria formosa RepID=UPI0003660B15
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_305_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6266..6595)
DNA (330bp) protein (110aa)
Uncharacterized protein Tax=Magnetospirillum sp. SO-1 RepID=M3AAG2_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_305_15
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6611..7987)
DNA (1377bp) protein (459aa)
eutB; ethanolamine ammonia-lyase heavy chain (EC:4.3.1.7)
Ethanolamine ammonia-lyase heavy chain {ECO:0000313|EMBL:AEI79073.1}; EC=4.3.1.7 {ECO:0000313|EMBL:AEI79073.1};; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
ethanolamine ammonia lyase large subunit Tax=Cupriavidus sp. UYPR2.512 RepID=UPI000363DE62
PLM4_5_b1_sep16_scaffold_305_16
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7998..8408)
DNA (411bp) protein (137aa)
hypothetical protein Tax=Lamprocystis purpurea RepID=UPI0003604DED
Uncharacterized protein {ECO:0000313|EMBL:EIJ33937.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
PilT protein domain-containing protein
PLM4_5_b1_sep16_scaffold_305_17
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8412..8672)
DNA (261bp) protein (87aa)
Uncharacterized protein Tax=Thiothrix nivea DSM 5205 RepID=I3BRE5_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_5_b1_sep16_scaffold_305_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8776..9513
DNA (738bp) protein (246aa)
Thioredoxin Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SLE1_THIDA
thioredoxin
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_305_19
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9568..9786
DNA (219bp) protein (73aa)
hypothetical protein SCB01_00340 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_305_20
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9801..10118
DNA (318bp) protein (106aa)
Uncharacterized protein Tax=Leptolyngbya sp. PCC 6406 RepID=L8LAI3_9CYAN
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_305_21
unknown

Not on your lists

10115..10243
DNA (129bp) protein (43aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_305_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10263..10739)
DNA (477bp) protein (159aa)
UPF0178 protein SCD_n02235 Tax=Sulfuricella denitrificans skB26 RepID=S6AD04_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_305_23
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10739..11053)
DNA (315bp) protein (105aa)
hypothetical protein Tax=Bradyrhizobium japonicum RepID=UPI00035D94C6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ37024.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
PLM4_5_b1_sep16_scaffold_305_24
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11120..12061
DNA (942bp) protein (314aa)
cytochrome C biogenesis protein Tax=Thiobacillus thioparus RepID=UPI000371FF4C
cytochrome C biogenesis protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_305_25
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12058..12342
DNA (285bp) protein (95aa)
Transcriptional regulatory protein, MerR family Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIZ2_THIDA
MerR family transcriptional regulator
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_305_26
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12332..12979)
DNA (648bp) protein (216aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI00037419A0
ABC transporter ATP-binding protein
Tax=CG_Rhodocyc_01
PLM4_5_b1_sep16_scaffold_305_27
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12972..13781)
DNA (810bp) protein (270aa)
Putative ATP-binding ABC transporter Tax=alpha proteobacterium BAL199 RepID=A8TUZ4_9PROT
Putative ATP-binding ABC transporter {ECO:0000313|EMBL:EDP63693.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
putative high-affinity branched-chain amino acid transporter, ATP-binding component of ABC transporter (livG-like)
PLM4_5_b1_sep16_scaffold_305_28
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13783..14718)
DNA (936bp) protein (312aa)
ABC transporter permease Tax=Novispirillum itersonii RepID=UPI000381B87B
Putative permease component of ABC transporter {ECO:0000313|EMBL:EKX82018.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida CSV86.;"
ABC transporter permease
PLM4_5_b1_sep16_scaffold_305_29
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14715..15611)
DNA (897bp) protein (299aa)
ABC transporter permease Tax=Pandoraea RepID=V5UBC9_9BURK
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:AIU26355.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
PLM4_5_b1_sep16_scaffold_305_30
Pandoraea sputorum, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15670..16950)
DNA (1281bp) protein (427aa)
ABC transporter substrate-binding protein Tax=Pandoraea RepID=V5UC66_9BURK
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AJC18750.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sputorum.;"
Displaying items 1-30 of 44 in total

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