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PLM4_5_b1_sep16_scaffold_472

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_472_1
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..141)
DNA (141bp) protein (47aa)
Lipopolysaccharide biosynthesis protein Tax=Sulfuricella denitrificans skB26 RepID=S6APC8_9PROT
lipopolysaccharide biosynthesis protein
Lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:BAN36749.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM4_5_b1_sep16_scaffold_472_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(174..785)
DNA (612bp) protein (204aa)
Polysaccharide export protein, outer membrane Tax=Sulfuricella denitrificans skB26 RepID=S6ADV2_9PROT
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIO49388.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
wza; polysaccharide export protein, outer membrane
PLM4_5_b1_sep16_scaffold_472_3
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1113..1967
DNA (855bp) protein (285aa)
Zinc finger, RanBP2-type Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RRM4_ACCPU
zinc finger, RanBP2-type
Zinc finger, RanBP2-type {ECO:0000313|EMBL:ACV34513.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
PLM4_5_b1_sep16_scaffold_472_4
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1969..3033
DNA (1065bp) protein (355aa)
TRAP-type uncharacterized transport system protein, periplasmic component Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VT77_POLNA
TRAP-type transport system periplasmic protein
TRAP-type uncharacterized transport system protein, periplasmic component {ECO:0000313|EMBL:ABM38855.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
PLM4_5_b1_sep16_scaffold_472_5
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3046..4173)
DNA (1128bp) protein (376aa)
Choline binding protein A Tax=Streptococcus pneumoniae RepID=G6R6L7_STREE
Tax=RBG_16_Gamma2_60_9_curated
PLM4_5_b1_sep16_scaffold_472_6
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4279..6192)
DNA (1914bp) protein (638aa)
Transglutaminase-like enzyme, predicted cysteine protease bin=GWA2_Methylomirabilis_73_35 species=Cylindrospermum stagnale genus=Cylindrospermum taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transglutaminase domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_472_7
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6189..7535)
DNA (1347bp) protein (449aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Cylindrospermum stagnale genus=Cylindrospermum taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_472_8
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7532..8473)
DNA (942bp) protein (314aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Cylindrospermum stagnale genus=Cylindrospermum taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ATPase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_472_9
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8476..9204)
DNA (729bp) protein (243aa)
Short-chain dehydrogenase/reductase SDR Tax=Burkholderia sp. RPE64 RepID=R4WP13_9BURK
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM4_5_b1_sep16_scaffold_472_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9207..11204)
DNA (1998bp) protein (666aa)
NADH:flavin oxidoreductase/NADH oxidase (EC:1.3.1.34)
2,4-dienoyl-CoA reductase (NADPH) Tax=Streptomyces griseoaurantiacus M045 RepID=F3NT81_9ACTO
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_472_11
R_Betaproteobacteria_67_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11276..12130)
DNA (855bp) protein (285aa)
hypothetical protein Tax=Cupriavidus sp. WS RepID=UPI00036599E9
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
PLM4_5_b1_sep16_scaffold_472_12
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12142..13686
DNA (1545bp) protein (515aa)
Transcriptional regulator, AraC family Tax=Desulfovibrio fructosivorans JJ RepID=E1K0T1_DESFR
transcriptional regulator
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_472_13
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13689..14168
DNA (480bp) protein (160aa)
Methylated-DNA--protein-cysteine methyltransferase Tax=Xanthomonas translucens DAR61454 RepID=L7H2U5_XANCT
methylated-DNA/protein-cysteine methyltransferase
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_472_14
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14165..15646)
DNA (1482bp) protein (494aa)
Putative sigma54 specific transcriptional regulator Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RQ84_ACCPU
putative sigma54 specific transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM4_5_b1_sep16_scaffold_472_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15803..16180
DNA (378bp) protein (126aa)
Uncharacterized protein Tax=Sulfuricella denitrificans skB26 RepID=S6B1K5_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_472_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16180..16878
DNA (699bp) protein (233aa)
LuxR family transcriptional regulator Tax=Cupriavidus sp. HMR-1 RepID=L2EM17_9BURK
Variovorax paradoxus strain MEDvA23 contig_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36198.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
LuxR family transcriptional regulator
PLM4_5_b1_sep16_scaffold_472_17
R_NC10_66_22, NC10, Bacteria

Not on your lists

16875..17648
DNA (774bp) protein (258aa)
Uncharacterized protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y823_NITMU
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_5_b1_sep16_scaffold_472_18
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17645..18607)
DNA (963bp) protein (321aa)
threonine dehydratase (EC:4.3.1.19)
Uncharacterized protein Tax=alpha proteobacterium BAL199 RepID=A8TZQ5_9PROT
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_472_19
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18683..19612
DNA (930bp) protein (310aa)
Hypothetical secreted protein Tax=Azoarcus sp. (strain BH72) RepID=A1K1G5_AZOSB
hypothetical protein
Tax=RBG_16_Anaeromyxobacter_69_14_curated
PLM4_5_b1_sep16_scaffold_472_20
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19623..20909)
DNA (1287bp) protein (429aa)
paaF; phenylacetate-CoA ligase (EC:6.2.1.30)
Phenylacetate-CoA ligase Tax=Burkholderia pseudomallei RepID=A3NDY4_BURP6
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_5_b1_sep16_scaffold_472_21
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20906..21685)
DNA (780bp) protein (260aa)
paaG; enoyl-CoA hydratase II protein (EC:4.2.1.17)
enoyl-CoA hydratase Tax=Herbaspirillum seropedicae RepID=UPI0002E198FF
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM4_5_b1_sep16_scaffold_472_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21713..22324
DNA (612bp) protein (204aa)
phenylacetic acid degradation protein PaaY Tax=Marinobacterium stanieri RepID=UPI0002559927
phenylacetic acid degradation protein PaaY
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_472_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22321..23097
DNA (777bp) protein (259aa)
Enoyl-CoA hydratase/carnithine racemase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QMY8_AZOSU
enoyl-CoA hydratase/carnithine racemase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_472_24
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23450..24172
DNA (723bp) protein (241aa)
Major facilitator superfamily MFS_1 Tax=Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) RepID=A4SW06_POLSQ
major facilitator transporter
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_472_25
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24200..25789
DNA (1590bp) protein (530aa)
AMP-dependent synthetase and ligase Tax=Thauera aminoaromatica S2 RepID=N6YBB3_9RHOO
AMP-dependent synthetase and ligase
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_472_26
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25779..26789
DNA (1011bp) protein (337aa)
Putative transporter, EamA family protein Tax=Azospirillum brasilense Sp245 RepID=G8AX02_AZOBR
hypothetical protein
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_472_27
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(26849..29644)
DNA (2796bp) protein (932aa)
Peptidase S45 penicillin amidase Tax=Acidovorax sp. KKS102 RepID=K0I9J1_9BURK
peptidase S45 penicillin amidase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_5_b1_sep16_scaffold_472_28
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29783..30979
DNA (1197bp) protein (399aa)
phaZ; polyhydroxyalkanoate depolymerase, intracellular (EC:3.1.1.-)
esterase Tax=Caldimonas manganoxidans RepID=UPI00037AF34A
Tax=RBG_16_Betaproteobacteria_66_20_curated
PLM4_5_b1_sep16_scaffold_472_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31139..32083)
DNA (945bp) protein (315aa)
Transcriptional regulator, LysR family Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y9X3_NITMU
transcriptional regulator CysB-like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_5_b1_sep16_scaffold_472_30
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32157..33815
DNA (1659bp) protein (553aa)
cysI; putative sulfite reductase (EC:1.8.1.2)
Putative sulfite reductase Tax=Azoarcus sp. (strain BH72) RepID=A1K2J4_AZOSB
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
Displaying 30 items

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