ggKbase home page

PLM4_5_b1_sep16_scaffold_4314

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_4314_1
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..396
DNA (396bp) protein (132aa)
TonB family protein Tax=Sulfuricella denitrificans skB26 RepID=S6AZY6_9PROT
TonB family protein
TonB family protein {ECO:0000313|EMBL:BAN34062.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM4_5_b1_sep16_scaffold_4314_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

633..1451
DNA (819bp) protein (273aa)
Shikimate dehydrogenase Tax=Methylotenera sp. (strain 301) RepID=D7DNA7_METS0
shikimate 5-dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_5_b1_sep16_scaffold_4314_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1477..2175
DNA (699bp) protein (233aa)
Monofunctional biosynthetic peptidoglycan transglycosylase Tax=Sulfuricella denitrificans skB26 RepID=S6A9F9_9PROT
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_4314_4
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2253..2582)
DNA (330bp) protein (110aa)
hypothetical protein Tax=Pseudomonas luteola RepID=UPI000366E3F1
Uncharacterized protein {ECO:0000313|EMBL:EGP47887.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_4314_5
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2763..3242
DNA (480bp) protein (160aa)
Putative cytochrome c, putative SoxX protein Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y5Z4_LEPCP
Uncharacterized protein {ECO:0000313|EMBL:KJS34494.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
putative cytochrome c SoxX protein
PLM4_5_b1_sep16_scaffold_4314_6
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3247..3708
DNA (462bp) protein (154aa)
sulfur oxidation protein SoxY Tax=Bradyrhizobium elkanii RepID=UPI000303F7FD
Sulfur oxidation protein SoxY {ECO:0000313|EMBL:KJC60810.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
sulfur oxidation protein SoxY
PLM4_5_b1_sep16_scaffold_4314_7
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3712..4032
DNA (321bp) protein (107aa)
Sulfur oxidation protein SoxZ Tax=Oceanibaculum indicum P24 RepID=K2KNA9_9PROT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM4_5_b1_sep16_scaffold_4314_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4029..4817
DNA (789bp) protein (263aa)
SoxAX cytochrome complex subunit A Tax=Mesorhizobium sp. STM 4661 RepID=M5FL64_9RHIZ
diheme cytochrome C; sulfur oxidizing protein SoxA
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_4314_9
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4824..6470)
DNA (1647bp) protein (549aa)
Putative uncharacterized protein bin=GWE2_Gallionellales_58_10 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_4314_10
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6577..6762)
DNA (186bp) protein (62aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta Tax=mine drainage metagenome RepID=T0YFS0_9ZZZZ
2-oxoglutarate ferredoxin oxidoreductase subunit beta
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_4314_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6768..7646)
DNA (879bp) protein (293aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta Tax=Rudaea cellulosilytica RepID=UPI0003822CCD
2-oxoglutarate ferredoxin oxidoreductase subunit beta
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_5_b1_sep16_scaffold_4314_12
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7718..9364)
DNA (1647bp) protein (549aa)
ferredoxin oxidoreductase Tax=Rudaea cellulosilytica RepID=UPI00036C88DB
pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
Displaying 12 items

View Taxonomy