ggKbase home page

PLM4_5_b1_sep16_scaffold_8110

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_8110_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..259)
DNA (258bp) protein (86aa)
Uncharacterized protein Tax=Methylobacterium sp. (strain 4-46) RepID=B0UGH9_METS4
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_8110_2
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(256..1242)
DNA (987bp) protein (329aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
PLM4_5_b1_sep16_scaffold_8110_3
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(1668..2615)
DNA (948bp) protein (316aa)
hypothetical protein Tax=Methylobacterium sp. WSM2598 RepID=UPI00036C67D8
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_5_b1_sep16_scaffold_8110_4
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2760..4592)
DNA (1833bp) protein (611aa)
ABC transporter substrate-binding protein Tax=Bradyrhizobium japonicum RepID=UPI00037E1642
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_5_b1_sep16_scaffold_8110_5
unknown

Not on your lists

comp(4698..4871)
DNA (174bp) protein (58aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_8110_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5110..5754)
DNA (645bp) protein (215aa)
Transcriptional regulator, Crp/Fnr family Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K7C8_NITWC
Crp/Fnr family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_5_b1_sep16_scaffold_8110_7
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5844..6443)
DNA (600bp) protein (200aa)
Sarcosine oxidase gamma subunit Tax=Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1) RepID=F6EPL6_AMYSD
Sarcosine oxidase subunit gamma {ECO:0000313|EMBL:KJB91099.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
soxG; sarcosine oxidase subunit gamma
PLM4_5_b1_sep16_scaffold_8110_8
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6436..8100)
DNA (1665bp) protein (555aa)
Sarcosine oxidase, alpha subunit family, heterotetrameric form Tax=alpha proteobacterium HIMB59 RepID=J9Z273_9PROT
Sarcosine oxidase subunit alpha {ECO:0000313|EMBL:KJB91098.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
sarcosine oxidase subunit alpha family protein
PLM4_5_b1_sep16_scaffold_8110_9
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8297..9268
DNA (972bp) protein (324aa)
Uncharacterized protein {ECO:0000313|EMBL:KDB51290.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
PLM4_5_b1_sep16_scaffold_8110_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9319..9576)
DNA (258bp) protein (86aa)
Sarcosine oxidase delta subunit heterotetrameric Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C1G2_NITHN
sarcosine oxidase subunit delta
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_8110_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9581..10921)
DNA (1341bp) protein (447aa)
soxB; sarcosine oxidase subunit beta (EC:1.5.3.1)
Sarcosine oxidase beta subunit Tax=Bordetella RepID=J7RHQ3_BORP1
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_8110_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11032..11994
DNA (963bp) protein (321aa)
LysR family transcriptional regulator Tax=Bordetella RepID=F4LFF5_BORPC
LysR family regulatory protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_8110_13
Gammaproteobacteria bacterium MOLA455, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11997..12653
DNA (657bp) protein (219aa)
(2R)-3-sulfolactate dehydrogenase (NADP(+)) {ECO:0000313|EMBL:ETN92799.1}; EC=1.1.1.338 {ECO:0000313|EMBL:ETN92799.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MOLA455.;"
Hypothetical oxidoreductase yiaK Tax=gamma proteobacterium HTCC2207 RepID=Q1YQC0_9GAMM
hypothetical protein
PLM4_5_b1_sep16_scaffold_8110_14
gamma proteobacterium HTCC2207, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12653..12952
DNA (300bp) protein (100aa)
Hypothetical oxidoreductase yiaK Tax=gamma proteobacterium HTCC2207 RepID=Q1YQC0_9GAMM
Hypothetical oxidoreductase yiaK {ECO:0000313|EMBL:EAS46323.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; SAR92 clade.;" source="gamma proteobacterium HTCC2207.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_8110_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13098..14042
DNA (945bp) protein (315aa)
hypothetical protein Tax=Massilia niastensis RepID=UPI00036FCAFE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_8110_16
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14053..14541
DNA (489bp) protein (163aa)
Putative dipeptidase Tax=Bordetella bronchiseptica (strain MO149) RepID=K0MVU9_BORBM
dipeptidase
Membrane dipeptidase family M10 {ECO:0000313|EMBL:KDD50618.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
Displaying 16 items

View Taxonomy