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PLM4_5_b1_sep16_scaffold_1387

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1387_1
unknown

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3..164
DNA (162bp) protein (54aa)
hypothetical protein
PLM4_5_b1_sep16_scaffold_1387_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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719..1069
DNA (351bp) protein (117aa)
UPF0102 protein Dsui_0252 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QMU1_AZOSU bin=16ft_combo_ws3_JS1 species=Azospira oryzae genus=Azospira taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1387_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1075..2409
DNA (1335bp) protein (445aa)
Monogalactosyldiacylglycerol synthase Tax=Desulfotomaculum RepID=F6B637_DESCC bin=16ft_combo_ws3_JS1 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
monogalactosyldiacylglycerol synthase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1387_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(2413..4002)
DNA (1590bp) protein (530aa)
Uncharacterized protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D115_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20027.1}; Flags: Precursor;; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
putative glycosyl hydrolase
PLM4_5_b1_sep16_scaffold_1387_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4131..5126
DNA (996bp) protein (332aa)
Putative transport system kinase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A942_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative transport system kinase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1387_6
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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5138..5701
DNA (564bp) protein (188aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] bin=bin3_NC10 species=Meiothermus ruber genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin3_NC10 organism_group=NC10
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
msrA; peptide methionine sulfoxide reductase MsrA
PLM4_5_b1_sep16_scaffold_1387_7
unknown

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5792..5980
DNA (189bp) protein (63aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1387_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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6002..6241
DNA (240bp) protein (80aa)
hypothetical protein bin=bin3_NC10 species=Methylosinus sp. LW4 genus=Methylosinus taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_1387_9
CSP1_5_NC10, NC10, Bacteria

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6201..6524
DNA (324bp) protein (108aa)
hypothetical protein bin=bin3_NC10 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=CSP1_5_NC10
PLM4_5_b1_sep16_scaffold_1387_10
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(6538..7446)
DNA (909bp) protein (303aa)
Putative uncharacterized protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHQ9_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF43591.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM4_5_b1_sep16_scaffold_1387_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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7665..9416
DNA (1752bp) protein (584aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase, large subunit Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CJH0_DESK7 bin=16ft_combo_ws3_JS1 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1387_12
Nocardiopsis alba, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

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9422..10183
DNA (762bp) protein (254aa)
hypothetical protein Tax=Nocardiopsis valliformis RepID=UPI00037C8889
CAAX protease self-immunity family protein
CAAX protease self-immunity family protein {ECO:0000313|EMBL:AFR08599.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis alba (strain ATCC BAA-2165 / BE74).;"
PLM4_5_b1_sep16_scaffold_1387_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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10188..10826
DNA (639bp) protein (213aa)
id=5224680 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1387_14
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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10842..11537
DNA (696bp) protein (232aa)
glycosyltransferase (EC:2.4.-.-)
Putative glycosyltransferase {ECO:0000313|EMBL:BAH54048.1}; EC=2.4.-.- {ECO:0000313|EMBL:BAH54048.1};; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;"
Putative glycosyltransferase Tax=Rhodococcus opacus (strain B4) RepID=C1AY53_RHOOB
PLM4_5_b1_sep16_scaffold_1387_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

11537..11803
DNA (267bp) protein (89aa)
Putative isobutyryl-CoA mutase small subunit Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A940_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
methylmalonyl-CoA mutase domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 15 items

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