ggKbase home page

PLM4_5_b1_sep16_scaffold_1559

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1559_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

42..461
DNA (420bp) protein (140aa)
queF; NADPH-dependent 7-cyano-7-deazaguanine reductase (7-cyano-7-carbaguanine reductase) (PreQ(0) reductase) (NADPH-dependent nitrile oxidoreductase) (EC:1.7.1.13) bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
queF; NADPH-dependent 7-cyano-7-deazaguanine reductase (7-cyano-7-carbaguanine reductase) (PreQ(0) reductase) (NADPH-dependent nitrile oxidoreductase) (EC:1.7.1.13)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1559_2
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(397..1410)
DNA (1014bp) protein (338aa)
Response regulator receiver modulated metal dependent phosphohydrolase Tax=Oscillochloris trichoides DG-6 RepID=E1ICP2_9CHLR
Response regulator receiver modulated metal dependent phosphohydrolase {ECO:0000313|EMBL:EFO81062.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
response regulator receiver modulated metal dependent phosphohydrolase
PLM4_5_b1_sep16_scaffold_1559_3
unknown

Not on your lists

1723..2766
DNA (1044bp) protein (348aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1559_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

2967..3842
DNA (876bp) protein (292aa)
protein serine phosphatase with GAF(s) sensor(s); K07315 sigma-B regulation protein RsbU (phosphoserine phosphatase) bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
protein serine/threonine phosphatase with GAF(s) sensor(s)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1559_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3849..5012)
DNA (1164bp) protein (388aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Janthinobacterium lividum genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
glucose/sorbosone dehydrogenase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1559_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

5111..6283
DNA (1173bp) protein (391aa)
h16_A1828; glucose/sorbosone dehydrogenase (EC:1.1.1.-)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1559_7
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6280..7449
DNA (1170bp) protein (390aa)
h16_A1828; glucose/sorbosone dehydrogenase (EC:1.1.1.-)
glucose dehydrogenase Tax=Cupriavidus sp. UYPR2.512 RepID=UPI000376AD2D
Glucose dehydrogenase {ECO:0000313|EMBL:EYS84919.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
PLM4_5_b1_sep16_scaffold_1559_8
unknown

Not on your lists

7469..7831
DNA (363bp) protein (121aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1559_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

7828..8868
DNA (1041bp) protein (347aa)
Uncharacterized protein Tax=Cystobacter fuscus DSM 2262 RepID=L9JN46_9DELT bin=16ft_combo_ws3_JS1 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1559_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8955..9506
DNA (552bp) protein (184aa)
DtxR family iron (metal) dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
DtxR family iron (metal) dependent repressor
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1559_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9503..9748
DNA (246bp) protein (82aa)
FeoA family protein; K04758 ferrous iron transport protein A bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
FeoA family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1559_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9732..11975
DNA (2244bp) protein (748aa)
Ferrous iron transporter FeoB Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LK68_CHLTF bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ferrous iron transporter FeoB
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1559_13
unknown

Not on your lists

11972..12235
DNA (264bp) protein (88aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1559_14
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

12232..13467
DNA (1236bp) protein (412aa)
alias=gwe2_scaffold_136_199 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein
Tax=RBG_13_Caldithrix_44_9_curated
PLM4_5_b1_sep16_scaffold_1559_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(13276..14505)
DNA (1230bp) protein (410aa)
alias=16ft_combo_ws3_scaffold_2252_27 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1559_16
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14688..15296
DNA (609bp) protein (203aa)
Uncharacterized protein Tax=Cupriavidus basilensis OR16 RepID=H1S688_9BURK
Uncharacterized protein {ECO:0000313|EMBL:KJK17742.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_1559_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(15293..16714)
DNA (1422bp) protein (474aa)
Uncharacterized protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MWE3_CORCM
CHAT domain protein
CHAT domain protein {ECO:0000313|EMBL:AHG89718.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying 17 items

View Taxonomy