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PLM4_5_b1_sep16_scaffold_1688

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_1688_1
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(77..562)
DNA (486bp) protein (162aa)
hypothetical protein Tax=Sphingopyxis baekryungensis RepID=UPI0003B5FF0A
Uncharacterized protein {ECO:0000313|EMBL:KGM57736.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_1688_2
unknown

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comp(612..992)
DNA (381bp) protein (127aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1688_3
unknown

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1272..1481
DNA (210bp) protein (70aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_1688_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1647..3200
DNA (1554bp) protein (518aa)
mmsA; methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27)
methylmalonate-semialdehyde dehydrogenase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1688_5
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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3243..4109
DNA (867bp) protein (289aa)
apolipoprotein acyltransferase Tax=Spirosoma luteum RepID=UPI0003792D7F
N-carbamoylputrescine amidase {ECO:0000313|EMBL:EYF01161.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
putative acyltranfserase
PLM4_5_b1_sep16_scaffold_1688_6
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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4116..4529
DNA (414bp) protein (138aa)
hypothetical protein Tax=Chelatococcus sp. GW1 RepID=UPI0002D39FD7
glyoxalase/bleomycin resistance protein/dioxygenase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_5_b1_sep16_scaffold_1688_7
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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4543..5952
DNA (1410bp) protein (470aa)
dht; dihydropyrimidinase (EC:3.5.2.2)
Dihydropyrimidinase {ECO:0000313|EMBL:CAN96566.1}; EC=3.5.2.2 {ECO:0000313|EMBL:CAN96566.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
phenylhydantoinase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
PLM4_5_b1_sep16_scaffold_1688_8
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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5949..7292
DNA (1344bp) protein (448aa)
Glutamate synthase [NADPH] Tax=Sorangium cellulosum (strain So ce56) RepID=A9GKC7_SORC5 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Pyridine nucleotide-disulfide oxidoreductase associated with reductive pyrimidine catabolism {ECO:0000313|EMBL:EYF01163.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
glutamate synthase
PLM4_5_b1_sep16_scaffold_1688_9
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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7305..8639
DNA (1335bp) protein (445aa)
yeiA; dihydropyrimidine dehydrogenase (EC:1.3.1.2) bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
yeiA; dihydropyrimidine dehydrogenase (EC:1.3.1.2)
Dihydropyrimidine dehydrogenase {ECO:0000313|EMBL:KFE62730.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
PLM4_5_b1_sep16_scaffold_1688_10
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8623..9849
DNA (1227bp) protein (409aa)
Major facilitator superfamily MFS_1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GXZ4_CUPNN
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEI82214.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
PLM4_5_b1_sep16_scaffold_1688_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9926..11359
DNA (1434bp) protein (478aa)
Cytosine/purines, uracil, thiamine, allantoin transporter Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q099I5_STIAD bin=16ft_combo_ws3_JS1 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
cytosine/purines, uracil, thiamine, allantoin transporter
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_1688_12
Halomonas anticariensis, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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11407..12780
DNA (1374bp) protein (458aa)
FAD linked oxygen oxidoreductase; putative (R)-6-hydroxynicotine oxidase (EC:1.5.3.6)
FAD-linked oxidase Tax=Halomonas anticariensis FP35 = DSM 16096 RepID=S2LF00_9GAMM
FAD-linked oxidase {ECO:0000313|EMBL:EPC03296.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas anticariensis FP35 = DSM 16096.;"
Displaying 12 items

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