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PLM4_5_b1_sep16_scaffold_3390

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_3390_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3..3131
DNA (3129bp) protein (1043aa)
Uncharacterized protein Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AIT4_IGNAJ bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3390_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3128..4150
DNA (1023bp) protein (341aa)
Uncharacterized protein Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AIT5_IGNAJ bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3390_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4153..5748
DNA (1596bp) protein (532aa)
Uncharacterized protein Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QT85_SPILD bin=16ft_combo_ws3_JS1 species=Spirosoma linguale genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3390_4
unknown

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comp(6010..6291)
DNA (282bp) protein (94aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_3390_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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7211..9253
DNA (2043bp) protein (681aa)
hypothetical protein VspiD_13650 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744BB8 bin=16ft_combo_ws3_JS1 species=Verrucomicrobium spinosum genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
cellobiose phosphorylase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3390_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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9380..10162
DNA (783bp) protein (261aa)
alias=16ft_combo_ws3_scaffold_136_20 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3390_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(10247..10912)
DNA (666bp) protein (222aa)
alkyl hydroperoxide reductase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_3390_8
unknown

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comp(10909..11046)
DNA (138bp) protein (46aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_3390_9
Oscillatoria acuminata, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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11758..12837
DNA (1080bp) protein (360aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria acuminata PCC 6304.;"
Putative ribosome biogenesis GTPase RsgA Tax=Oscillatoria acuminata PCC 6304 RepID=K9TDK4_9CYAN
ribosome small subunit-dependent GTPase A
PLM4_5_b1_sep16_scaffold_3390_10
RBG_19FT_COMBO_Aminicenantes_59_29_curated, Aminicenantes, Bacteria

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13168..15774
DNA (2607bp) protein (869aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
peptidase M14 carboxypeptidase A
Tax=RBG_19FT_COMBO_Aminicenantes_59_29_curated
PLM4_5_b1_sep16_scaffold_3390_11
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(15796..16713)
DNA (918bp) protein (306aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Ornithine carbamoyltransferase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQN0_KORVE
ornithine carbamoyltransferase
PLM4_5_b1_sep16_scaffold_3390_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(16731..17564)
DNA (834bp) protein (278aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Shewanella violacea genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 12 items

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