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PLM4_5_b1_sep16_scaffold_2245

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_2245_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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1..549
DNA (549bp) protein (183aa)
Response regulator Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D153_PELTS bin=16ft_combo_ws3_JS1 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2245_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

566..2323
DNA (1758bp) protein (586aa)
Sensor protein yycG (EC:2.7.13.3)
Multi-sensor signal transduction histidine kinase Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QIL2_DESB2 bin=16ft_combo_ws3_JS1 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2245_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

2594..4348
DNA (1755bp) protein (585aa)
Uncharacterized protein Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LFT3_HALO1
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_5_b1_sep16_scaffold_2245_4
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4471..7287
DNA (2817bp) protein (939aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037E88A5
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AEI63375.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
PLM4_5_b1_sep16_scaffold_2245_5
unknown

Not on your lists

7287..7895
DNA (609bp) protein (203aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_2245_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8030..8368
DNA (339bp) protein (113aa)
alias=16ft_combo_ws3_scaffold_2095_17 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2245_7
unknown

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8492..9013
DNA (522bp) protein (174aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_2245_8
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

9010..9675
DNA (666bp) protein (222aa)
phosphate-selective porin o and p family protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM4_5_b1_sep16_scaffold_2245_9
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

9690..10523
DNA (834bp) protein (278aa)
ABC-type phosphate-transport system, binding protein component PstS bin=GWF2_Melioribacter_38_21 species=Flavobacterium psychrophilum genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
phosphate binding protein
Tax=RBG_16_Zixibacteria_50_21_curated
PLM4_5_b1_sep16_scaffold_2245_10
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10555..11316
DNA (762bp) protein (254aa)
Phosphate binding protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7D7_ANADF
Phosphate-binding protein {ECO:0000313|EMBL:KFA92514.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
phosphate binding protein
PLM4_5_b1_sep16_scaffold_2245_11
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11313..12281
DNA (969bp) protein (323aa)
Phosphate ABC transporter, inner membrane subunit PstC Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J9S6_ANAD2
Putative ABC transporter permease protein YqgH {ECO:0000313|EMBL:GAO04188.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
phosphate ABC transporter permease
PLM4_5_b1_sep16_scaffold_2245_12
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

12278..13222
DNA (945bp) protein (315aa)
Phosphate ABC transporter permease PstA Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MSE0_CORCM
pstA; phosphate ABC transporter permease
Tax=RBG_16_Zixibacteria_50_21_curated
PLM4_5_b1_sep16_scaffold_2245_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13260..14072
DNA (813bp) protein (271aa)
Phosphate ABC transporter, ATPase subunit Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7E0_ANADF bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
phosphate transporter ATP-binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2245_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

14113..14814
DNA (702bp) protein (234aa)
Phosphate-specific transport system accessory protein PhoU Tax=Pedosphaera parvula Ellin514 RepID=B9XLG7_9BACT bin=16ft_combo_ws3_JS1 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
phoU; phosphate transport system regulatory protein PhoU
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2245_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(14830..15168)
DNA (339bp) protein (113aa)
Class I peptide chain release factor Tax=Anaeromyxobacter RepID=B4UBN2_ANASK bin=16ft_combo_ws3_JS1 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
class I peptide chain release factor
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2245_16
unknown

Not on your lists

comp(15168..16277)
DNA (1110bp) protein (370aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_2245_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

16486..17892
DNA (1407bp) protein (469aa)
M16 family peptidase (EC:3.4.24.-)
M16 family peptidase Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8N0J7_CORCM bin=16ft_combo_ws3_JS1 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2245_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17889..19193
DNA (1305bp) protein (435aa)
M16 family peptidase (EC:3.4.24.-); K01417 [EC:3.4.24.-] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptidase, m16 (pitrilysin) family (EC:3.4.24.-)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2245_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

19219..19503
DNA (285bp) protein (95aa)
Permeases of the major facilitator superfamily Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=Q8R9S3_THETN bin=16ft_combo_ws3_JS1 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
major facilitator superfamily MFS-1
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 19 items

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