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PLM4_5_b1_sep16_scaffold_2415

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_2415_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1..609)
DNA (609bp) protein (203aa)
Gliding motility protein Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NM64_MARHT bin=16ft_combo_ws3_JS1 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
gliding motility protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2415_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(649..1137)
DNA (489bp) protein (163aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7E7_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2415_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1252..2328)
DNA (1077bp) protein (359aa)
hypothetical protein GobsU_05174 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4B38 bin=16ft_combo_ws3_JS1 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2415_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2344..2943)
DNA (600bp) protein (200aa)
Recombination protein RecR Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6YAG5_THEBD bin=16ft_combo_ws3_JS1 species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
recR; recombination protein RecR
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2415_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2960..3271)
DNA (312bp) protein (104aa)
Nucleoid-associated protein TherJR_0069 Tax=Thermincola potens (strain JR) RepID=D5X8W5_THEPJ bin=16ft_combo_ws3_JS1 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2415_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3268..5109)
DNA (1842bp) protein (614aa)
DNA polymerase III, gamma and tau subunits Tax=Geobacter metallireducens RepID=Q39Q40_GEOMG bin=16ft_combo_ws3_JS1 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
dnaX; DNA polymerase III subunits gamma and tau
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2415_trna_1
unknown

Not on your lists

comp(5291..5363)
DNA (73bp)
transferRNA Ala
PLM4_5_b1_sep16_scaffold_2415_7

Not on your lists

comp(5461..7077)
DNA (1617bp) protein (539aa)
protein kinase (EC:2.7.11.1)
Protein kinase Tax=Sorangium cellulosum (strain So ce56) RepID=A9F816_SORC5
Marine sediment metagenome DNA, contig: S01H1_S17395 {ECO:0000313|EMBL:GAG26236.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM4_5_b1_sep16_scaffold_2415_8
unknown

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comp(7103..7759)
DNA (657bp) protein (219aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_2415_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7825..9231)
DNA (1407bp) protein (469aa)
Uncharacterized protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Glycerophosphoryl diester phosphodiesterase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2415_10
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

Not on your lists

comp(9476..11833)
DNA (2358bp) protein (786aa)
TPR repeat-containing serine/threonin protein kinase bin=RBG_19FT_COMBO_Aminicenantes_65_30 tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
serine/threonin protein kinase
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
PLM4_5_b1_sep16_scaffold_2415_11
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

comp(11866..12705)
DNA (840bp) protein (280aa)
Integral membrane protein TerC bin=GWA2_OP3_52_12 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
integral membrane protein TerC
Tax=RBG_16_Acidobacteria_64_8_curated
Displaying 12 items

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