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PLM4_5_b1_sep16_scaffold_2845

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_2845_1
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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1..495
DNA (495bp) protein (165aa)
O-antigen polymerase bin=GWC2_Ignavibacteria_38_9 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
lipid A core - O-antigen ligase-like protein
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
PLM4_5_b1_sep16_scaffold_2845_2
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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492..2075
DNA (1584bp) protein (528aa)
Uncharacterized protein Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QE39_SPILD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB41255.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
PLM4_5_b1_sep16_scaffold_2845_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2070..3332)
DNA (1263bp) protein (421aa)
Glutamate/aspartate:cation symporter family protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q092N3_STIAD bin=16ft_combo_ws3_JS1 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
sodium:dicarboxylate symporter family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2845_4
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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3416..5011
DNA (1596bp) protein (532aa)
delta-1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12); K00294 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.1.12] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Fervidobacterium pennivorans genus=Fervidobacterium taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
delta-1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM4_5_b1_sep16_scaffold_2845_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(5070..6119)
DNA (1050bp) protein (350aa)
Diguanylate cyclase with GAF sensor Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LR80_ACIC1 bin=16ft_combo_ws3_JS1 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
serine/threonine protein kinase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_2845_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(6390..7829)
DNA (1440bp) protein (480aa)
Putative DNA-directed DNA polymerase, family X, modulated with phosphoesterase domain Tax=Candidatus Nitrospira defluvii RepID=D8PJE6_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 6 items

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