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PLM4_5_b1_sep16_scaffold_24000

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_24000_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(3..1499)
DNA (1497bp) protein (499aa)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SLA5_THEM7 bin=16ft_combo_ws3_JS1 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_24000_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(1456..2373)
DNA (918bp) protein (306aa)
Alanine--tRNA ligase Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SLA5_THEM7 bin=16ft_combo_ws3_JS1 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Suspect SCG annotation. See neighboring gene [PLM4_5_b1_sep16_scaffold_24000_1].
alanyl-tRNA synthetase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_24000_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2620..3117)
DNA (498bp) protein (166aa)
Regulatory protein RecX Tax=uncultured candidate division OP1 bacterium RepID=H5SRP5_9BACT bin=16ft_combo_ws3_JS1 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
recX; recombination regulator RecX
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_24000_4
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3137..3802)
DNA (666bp) protein (222aa)
Isoprenylcysteine carboxyl methyltransferase Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IEA7_BEII9
isoprenylcysteine carboxyl methyltransferase
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:ACB95505.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
PLM4_5_b1_sep16_scaffold_24000_5
Streptomyces sp. W007, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(3923..4930)
DNA (1008bp) protein (336aa)
Protein RecA Tax=Streptomyces RepID=H0BNT0_9ACTO
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. W007.;"
recA; recombinase RecA
Displaying 5 items

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