ggKbase home page

PLM4_5_b1_sep16_scaffold_21962

Search features with annotation key words

Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_21962_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(54..1409)
DNA (1356bp) protein (452aa)
L-lysine 6-transaminase; K03918 L-lysine 6-transaminase [EC:2.6.1.36] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
L-lysine 6-transaminase (EC:2.6.1.36)
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_21962_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1409..1921)
DNA (513bp) protein (171aa)
AsnC family transcriptional regulator; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
AsnC family transcriptional regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_21962_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

1952..2668
DNA (717bp) protein (239aa)
thrH; phosphoserine phosphatase; K02203 phosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Propionibacterium sp. oral taxon 192 genus=Propionibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
thrH; phosphoserine--homoserine phosphotransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_21962_4
unknown

Not on your lists

comp(2520..3122)
DNA (603bp) protein (201aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_21962_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3236..3637)
DNA (402bp) protein (134aa)
Uncharacterized protein Tax=Leptospira inadai serovar Lyme str. 10 RepID=V6HER0_9LEPT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_21962_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3634..4119)
DNA (486bp) protein (162aa)
hypothetical protein Tax=Verrucomicrobium sp. 3C RepID=UPI00036F87EE
haloacid dehalogenase domain-containing protein hydrolase
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 6 items

View Taxonomy