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PLM4_5_b1_sep16_scaffold_382

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Displaying 25 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_382_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

3..1220
DNA (1218bp) protein (406aa)
alias=16ft_combo_ws3_scaffold_1471_21 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_2
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists

1664..4489
DNA (2826bp) protein (942aa)
TonB-dependent receptor Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0AHL2_IGNAJ
TonB-dependent receptor
Tax=BJP_IG2158_Zixibacteria_48_33
PLM4_5_b1_sep16_scaffold_382_3
RLO_PLX_64_10, Bacteria

Not on your lists

4527..7481
DNA (2955bp) protein (985aa)
Uncharacterized protein Tax=Melioribacter roseus (strain P3M) RepID=I6ZNF2_MELRP
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_5_b1_sep16_scaffold_382_4
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

7534..8556
DNA (1023bp) protein (341aa)
Uncharacterized protein bin=GWF2_Ignavibacteria_35_20 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
Tax=RBG_16_Zixibacteria_43_9_curated
PLM4_5_b1_sep16_scaffold_382_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8626..9894)
DNA (1269bp) protein (423aa)
glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NSQ3_GRAMM bin=16ft_combo_ws3_JS1 species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10046..10882)
DNA (837bp) protein (279aa)
alias=16ft_combo_ws3_scaffold_1471_19 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_7
unknown

Not on your lists

comp(10879..11556)
DNA (678bp) protein (226aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_382_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11553..13697)
DNA (2145bp) protein (715aa)
id=5223915 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

14247..15287
DNA (1041bp) protein (347aa)
Rod shape-determining protein MreB Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A3X8_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
mreB; rod shape-determining protein MreB
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15301..16110
DNA (810bp) protein (270aa)
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Rod shape-determining protein MreC
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

16133..16645
DNA (513bp) protein (171aa)
rod shape-determining protein MreD bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Selenomonas noxia genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

16614..18470
DNA (1857bp) protein (619aa)
penicillin-binding protein 2 (EC:2.4.1.129)
Penicillin-binding protein 2 Tax=Geobacter sp. (strain FRC-32) RepID=B9M5R1_GEOSF bin=16ft_combo_ws3_JS1 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

18460..19680
DNA (1221bp) protein (407aa)
mrdB; rod shape determining protein; K05837 rod shape determining protein RodA bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
mrdB; rod shape determining protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

19680..20468
DNA (789bp) protein (263aa)
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
prolipoprotein diacylglyceryl transferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

20465..21277
DNA (813bp) protein (271aa)
aroE; shikimate dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
shikimate dehydrogenase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

21274..21972
DNA (699bp) protein (233aa)
Phosphoribosyltransferase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C144_SPHTD bin=16ft_combo_ws3_JS1 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
phosphoribosyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

21972..22646
DNA (675bp) protein (225aa)
ABC-type Co2+ transport system permease component-like protein Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TNR0_ALKMQ bin=16ft_combo_ws3_JS1 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC-type Co2+ transport system permease component-like protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

22643..23362
DNA (720bp) protein (240aa)
Cobalt transport protein Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A6G6_NATTJ bin=16ft_combo_ws3_JS1 species=Natranaerobius thermophilus genus=Natranaerobius taxon_order=Natranaerobiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
cobalt transport protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

23359..24414
DNA (1056bp) protein (352aa)
ABC transporter-like protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ABC transporter-like protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

24411..25784
DNA (1374bp) protein (458aa)
AAA ATPase central domain protein Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z1E2_DESAT bin=16ft_combo_ws3_JS1 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
AAA ATPase central domain protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_382_21
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25794..26117)
DNA (324bp) protein (108aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source="Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) (Chromatium; violascens).;"
Signal transduction histidine kinase Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YG64_THIV6
signal transduction histidine kinase
PLM4_5_b1_sep16_scaffold_382_22
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27029..27379)
DNA (351bp) protein (117aa)
anti-sigma factor antagonist Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B518A1
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_382_23
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

comp(27372..29429)
DNA (2058bp) protein (686aa)
Serine phosphatase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS13_KORVE bin=16ft_combo_ws3_JS1 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
HAMP domain-containing protein,cache domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
PLM4_5_b1_sep16_scaffold_382_24
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists

comp(29426..31444)
DNA (2019bp) protein (673aa)
Tetratricopeptide TPR_1 repeat-containing protein bin=GWB2_Elusimicrobium_63_22 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
hypothetical protein
Tax=BJP_IG2158_Zixibacteria_48_33
PLM4_5_b1_sep16_scaffold_382_25
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists

comp(31441..34176)
DNA (2736bp) protein (912aa)
Tax=BJP_IG2158_Zixibacteria_48_33
Displaying 25 items

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