ggKbase home page

PLM4_5_b1_sep16_scaffold_550

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_550_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

1..453
DNA (453bp) protein (151aa)
5-oxoprolinase (ATP-hydrolyzing) Tax=Nitrolancetus hollandicus Lb RepID=I4EDH0_9CHLR bin=16ft_combo_ws3_JS1 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
5-oxoprolinase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_550_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

474..1706
DNA (1233bp) protein (411aa)
id=5223445 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_550_3
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1713..2222
DNA (510bp) protein (170aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Putative uncharacterized protein {ECO:0000313|EMBL:EDY80441.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_550_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(2219..3643)
DNA (1425bp) protein (475aa)
Glycoside hydrolase family 3 domain protein Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CXW2_TRURR bin=16ft_combo_ws3_JS1 species=Truepera radiovictrix genus=Truepera taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
glycoside hydrolase family 3 domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_550_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

3838..5013
DNA (1176bp) protein (392aa)
aminotransferase (EC:2.6.1.-)
Aminotransferase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q020Q6_SOLUE bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_550_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

5038..6744
DNA (1707bp) protein (569aa)
Periplasmic protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
periplasmic protease
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_550_7
unknown

Not on your lists

6925..7926
DNA (1002bp) protein (334aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_550_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7971..8771)
DNA (801bp) protein (267aa)
Putative uncharacterized protein Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QH12_DESB2 bin=16ft_combo_ws3_JS1 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_550_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(8825..9874)
DNA (1050bp) protein (350aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ04_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
membrane protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_550_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

9931..11139
DNA (1209bp) protein (403aa)
methionine gamma-lyase (EC:4.4.1.11)
Methionine gamma-lyase Tax=Methyloversatilis universalis FAM5 RepID=F5RA29_9RHOO bin=16ft_combo_ws3_JS1 species=Methyloversatilis universalis genus=Methyloversatilis taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_550_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

11269..11919
DNA (651bp) protein (217aa)
TPR repeat-containing protein Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2J9B9_NOSP7 bin=16ft_combo_ws3_JS1 species=Nostoc punctiforme genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_550_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

11998..13140
DNA (1143bp) protein (381aa)
class V aminotransferase (EC:2.8.1.7)
Cysteine desulfurase family protein Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PLM1_9FIRM bin=16ft_combo_ws3_JS1 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_550_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13137..14237
DNA (1101bp) protein (367aa)
tRNA-specific 2-thiouridylase MnmA Tax=Acidithiobacillus caldus RepID=F9ZM01_ACICS bin=16ft_combo_ws3_JS1 species=Acidithiobacillus caldus genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_550_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

14321..15151
DNA (831bp) protein (277aa)
Methyltransferase type 11 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C228_SPHTD bin=16ft_combo_ws3_JS1 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
SAM-dependent methyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_550_15
RBG_16_Zixibacteria_50_21_curated, Zixibacteria, Bacteria

Not on your lists

15257..15736
DNA (480bp) protein (160aa)
Uncharacterized protein Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L6S7_9BACT
putative GAF sensor protein
Tax=RBG_16_Zixibacteria_50_21_curated
PLM4_5_b1_sep16_scaffold_550_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

15746..17851
DNA (2106bp) protein (702aa)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI0003187B6A
PAS/PAC sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_5_b1_sep16_scaffold_550_17
unknown

Not on your lists

18119..18349
DNA (231bp) protein (77aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_550_trna_1
unknown

Not on your lists

18562..18646
DNA (85bp)
transferRNA Ser
PLM4_5_b1_sep16_scaffold_550_trna_2
unknown

Not on your lists

18660..18748
DNA (89bp)
transferRNA Ser
PLM4_5_b1_sep16_scaffold_550_trna_3
unknown

Not on your lists

18789..18862
DNA (74bp)
transferRNA Arg
PLM4_5_b1_sep16_scaffold_550_18
unknown

Not on your lists

18913..19263
DNA (351bp) protein (117aa)
id=24517708 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
PLM4_5_b1_sep16_scaffold_550_19
unknown

Not on your lists

19268..20011
DNA (744bp) protein (248aa)
CMP/dCMP deaminase zinc-binding protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Fibrobacter succinogenes genus=Fibrobacter taxon_order=Fibrobacterales taxon_class=Fibrobacteria phylum=Fibrobacteres tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
PLM4_5_b1_sep16_scaffold_550_20
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

20034..20510
DNA (477bp) protein (159aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
tRNA-adenosine deaminase (EC:3.5.4.-)
tRNA-specific adenosine-34 deaminase Tax=Patulibacter medicamentivorans RepID=H0EC34_9ACTN
PLM4_5_b1_sep16_scaffold_550_21
Pirellula staleyi, Pirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(20550..21149)
DNA (600bp) protein (200aa)
Uncharacterized protein Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2QWG6_PIRSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB17769.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
Displaying 24 items

View Taxonomy