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PLM4_5_b1_sep16_scaffold_709

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_709_1
unknown

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1..108
DNA (108bp) protein (36aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_709_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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105..1061
DNA (957bp) protein (319aa)
Enoyl-CoA hydratase/isomerase bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus metallidurans genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
enoyl-CoA hydratase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_5_b1_sep16_scaffold_709_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1065..1991)
DNA (927bp) protein (309aa)
TonB family protein; K03832 periplasmic protein TonB bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
TonB-like protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_709_4
Dehalogenimonas sp. WBC-2, Dehalogenimonas, Dehalococcoidia, Chloroflexi, Bacteria

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comp(2034..2879)
DNA (846bp) protein (282aa)
Methyltransferase type 11 Tax=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) RepID=D8K282_DEHLB
SAM-dependent methyltransferase {ECO:0000313|EMBL:AKG54308.1}; species="Bacteria; Chloroflexi; Dehalococcoidia; Dehalogenimonas.;" source="Dehalogenimonas sp. WBC-2.;"
methyltransferase type 11
PLM4_5_b1_sep16_scaffold_709_5
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2906..3217)
DNA (312bp) protein (104aa)
Regulatory protein ArsR Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HGH8_ANADF
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:ABS27824.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
PLM4_5_b1_sep16_scaffold_709_6
Actinotalea fermentans, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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3417..3920
DNA (504bp) protein (168aa)
phosphinothricin N-acetyltransferase Tax=Hymenobacter norwichensis RepID=UPI0003B4F651
Phosphinothricin acetyltransferase {ECO:0000313|EMBL:KGM16197.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133.;"
hypothetical protein
PLM4_5_b1_sep16_scaffold_709_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

4038..4844
DNA (807bp) protein (269aa)
3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55)
Enoyl-CoA hydratase Tax=uncultured bacterium A1Q1_fos_2037 RepID=L7W1I7_9BACT
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_709_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

4904..6085
DNA (1182bp) protein (394aa)
Peptidase S1 and S6 chymotrypsin/Hap Tax=Cyanothece sp. (strain PCC 8802) RepID=C7QP60_CYAP0
peptidase S1 and S6 chymotrypsin/Hap
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_709_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

6205..7224
DNA (1020bp) protein (340aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
lytB; drug tolerance protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Lautropia mirabilis genus=Lautropia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_709_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

7228..8064
DNA (837bp) protein (279aa)
Extradiol ring-cleavage dioxygenase class III protein subunit B Tax=Leptonema illini DSM 21528 RepID=H2CC52_9LEPT
Extradiol ring-cleavage dioxygenase class III protein subunit B
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_709_11
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8061..8912)
DNA (852bp) protein (284aa)
Endonuclease/exonuclease/phosphatase Tax=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) RepID=C5BV41_BEUC1
endonuclease/exonuclease/phosphatase
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:ACQ80428.1}; species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
PLM4_5_b1_sep16_scaffold_709_12
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(8915..10234)
DNA (1320bp) protein (440aa)
Quinoprotein glucose dehydrogenase Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SIH6_THEM7
Quinoprotein glucose dehydrogenase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM4_5_b1_sep16_scaffold_709_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

10426..11586
DNA (1161bp) protein (387aa)
group 1 glycosyl transferase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Geodermatophilus obscurus genus=Geodermatophilus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
group 1 glycosyl transferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_709_14
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11608..12198)
DNA (591bp) protein (197aa)
putative peroxidase-related enzyme bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Cesiribacter andamanensis genus=Cesiribacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=CG_Delta_07
PLM4_5_b1_sep16_scaffold_709_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

12390..13004
DNA (615bp) protein (205aa)
Superoxide dismutase Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GKM5_9FIRM bin=16ft_combo_ws3_JS1 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
manganese/iron superoxide dismutase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_709_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13087..13566
DNA (480bp) protein (160aa)
peroxiredoxin (EC:1.11.1.15)
bacterioferritin comigratory protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_709_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

13608..14258
DNA (651bp) protein (217aa)
Putative Peptidase S16, lon-like Tax=Candidatus Nitrospira defluvii RepID=D8PAN4_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative peptidase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_709_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

14867..15586
DNA (720bp) protein (240aa)
UPF0173 metal-dependent hydrolase Acid345_3437 Tax=Koribacter versatilis (strain Ellin345) RepID=Y3437_KORVE bin=16ft_combo_ws3_JS1 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
beta-lactamase-like protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_709_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(15722..16867)
DNA (1146bp) protein (382aa)
Abortive infection protein; K07052 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
CAAX amino terminal protease family
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_709_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

16906..17151
DNA (246bp) protein (82aa)
Molybdopterin converting factor, subunits 1/2 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D990_MYXXD bin=16ft_combo_ws3_JS1 species=Myxococcus xanthus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
moaDE; molybdopterin converting factor, subunits 1/2
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_5_b1_sep16_scaffold_709_21
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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17304..17816
DNA (513bp) protein (171aa)
GCN5-related N-acetyltransferase bin=GWC2_Chloroflexi_73_18 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
N-acetyltransferase GCN5
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_5_b1_sep16_scaffold_709_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17848..18114
DNA (267bp) protein (89aa)
Molybdopterin converting factor, large subunit Tax=Nitrococcus mobilis Nb-231 RepID=A4BPZ5_9GAMM bin=16ft_combo_ws3_JS1 species=Nitrococcus mobilis genus=Nitrococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
molybdopterin biosynthesis MoaE
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 22 items

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